View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_low_2 (Length: 700)
Name: NF13850_low_2
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_2 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 652; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 18 - 700
Target Start/End: Original strand, 11781820 - 11782503
Alignment:
| Q |
18 |
agattcggctgagtataacagatcattgacctcgggttttgatgatttcgcgagccttcttatcccattattcatctttatgtacttacctcctgttttt |
117 |
Q |
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| T |
11781820 |
agattcggctgaatataacatatcattgacctcgggttttgatgatttcgcgagccttcttatcccattattcatcttcatgtacttacctcctgttttt |
11781919 |
T |
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| Q |
118 |
tcttcaacctcgcgcttgaaaacatgaccttttgcatcagtgttatctctgactttccttttagaaccttcagctggaacttccttgtacctgaatctag |
217 |
Q |
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| T |
11781920 |
tcttcaacctcgcgcttgaaaacatgaccttttgcatcagtgttatctctgactttccttttagaaccttcagctggaacttccttgtacctgaatctag |
11782019 |
T |
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| Q |
218 |
gagcttcatgactcatattttcaaccggactcctatcattcattgattgctcacatggttttgataacattcttcgatgtttctttccaccattatgctt |
317 |
Q |
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| T |
11782020 |
gagcttcatgactcatattttcaaccggactcccatcattcgttgattgctcacatggttttgataacattcttcgatgtttctttccaccattatgctt |
11782119 |
T |
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| Q |
318 |
ttccaaacacttgacaggaacagtaacatcgcaagtttcacaatgtacaagttcaacggtggttacaacaggaatagttggtt-cagcgtttgatgtggt |
416 |
Q |
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| T |
11782120 |
ttccaaacacttgacaggaacagtaacatcgcaagtttcacaatgtacaagttcaacggtggttacaacaggaatagttggttccagcgtttgatgtggt |
11782219 |
T |
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| Q |
417 |
aagcacttcttgtcagcatagttttgaggtgtttggtgtggtaagtcaggtgtttgaactactggattcatttgagaattttgaatatgtctactctctt |
516 |
Q |
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| T |
11782220 |
aagcacttcatgtcagcatagttttgaggtgtttggtgtggtaagtcaggtgtttgaactactggattcatttgagaattttgaatatgtctactctctt |
11782319 |
T |
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| Q |
517 |
ctccatttgaagttttttgtttctttgatatatcacgtaacattcttcgatgtctctttccgttatgatgctcttccaaacgcttgtgagaaaccataat |
616 |
Q |
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| T |
11782320 |
ctccatttgaagttttttgtttctttgatatatcacgtaacattcttcgatgtctctttccgttatgatgctcttccaaacgcttgtgagaaaccataat |
11782419 |
T |
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| Q |
617 |
atgttgttccggtctctttggcgagcacgctttctcagcacattcttccataccacaattctgaacctcacggtgttctttccc |
700 |
Q |
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| T |
11782420 |
atgttgttccggtctctttggcgagcacgctttctcagcacattcttccataccacaattctgaacctcacggtgttctttccc |
11782503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 11790011 - 11790124
Alignment:
| Q |
35 |
acagatcattgacctcgggttttgatgatttcgcgagccttcttatcccattattcatctttatgtacttacctcctgttttttcttcaacctcgcgctt |
134 |
Q |
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| T |
11790011 |
acagagcattgaccccgggttttgatgatttcacgggcttttttttcccattattgatcttcatgcccttacctgttgttgctccttcaatcttgcgctt |
11790110 |
T |
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| Q |
135 |
gaaaacatgacctt |
148 |
Q |
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| T |
11790111 |
ggaaccatgacctt |
11790124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 11768442 - 11768477
Alignment:
| Q |
148 |
tttgcatcagtgttatctctgactttccttttagaa |
183 |
Q |
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| T |
11768442 |
tttgcatcagtgtcatctctgactttccttttagaa |
11768477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 15439751 - 15439681
Alignment:
| Q |
41 |
cattgacctcgggttttgatgatttcgcgagccttcttatcccattattcatctttatgtacttacctcct |
111 |
Q |
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| T |
15439751 |
cattggcctcgggttttgatgatttcacgggttttcttaccccattatccatcttcatgtatttatctcct |
15439681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 15439276 - 15439215
Alignment:
| Q |
177 |
tttagaaccttcagctggaacttccttgtacctgaatctaggagcttcatgactcatatttt |
238 |
Q |
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| T |
15439276 |
tttagaatctaccgctggaacttccttgttgctgaatctaggagcttcacgacacacatttt |
15439215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 52418498 - 52418443
Alignment:
| Q |
53 |
gttttgatgatttcgcgagccttcttatcccattattcatctttatgtacttacctc |
109 |
Q |
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| T |
52418498 |
gttttgatgatttcac-agccttcttatcccattgttcatcttcatgcatttacctc |
52418443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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