View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_low_27 (Length: 288)
Name: NF13850_low_27
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6954360 - 6954421
Alignment:
| Q |
1 |
aatttgacatgaaatttt-gttgatgcttttgatgaaaactcgccagagaactcaaaccaaa |
61 |
Q |
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| T |
6954360 |
aatttgacatgaaatttttgttgatgcttttgatgaaaactcgccagagaactcaaaccaaa |
6954421 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 6954532 - 6954583
Alignment:
| Q |
139 |
gatgaaaacaaaaactaggtttcttggagagcaagtgacggcaaactaggtt |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6954532 |
gatgaaaacaaaaactaggtttcttggagagcaagtgacggaaaactaggtt |
6954583 |
T |
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