View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13850_low_28 (Length: 258)

Name: NF13850_low_28
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13850_low_28
NF13850_low_28
[»] chr3 (6 HSPs)
chr3 (22-243)||(7622843-7623064)
chr3 (174-226)||(40557620-40557671)
chr3 (113-147)||(14271923-14271957)
chr3 (113-147)||(44953157-44953191)
chr3 (173-206)||(43774191-43774224)
chr3 (111-147)||(55195855-55195891)
[»] chr5 (4 HSPs)
chr5 (106-206)||(9963422-9963522)
chr5 (173-206)||(3102183-3102216)
chr5 (110-147)||(13754071-13754108)
chr5 (181-221)||(26409246-26409285)
[»] chr4 (6 HSPs)
chr4 (100-147)||(22478723-22478770)
chr4 (173-206)||(9084765-9084798)
chr4 (173-206)||(31480277-31480310)
chr4 (173-206)||(36008281-36008314)
chr4 (173-206)||(48512205-48512238)
chr4 (173-206)||(56531292-56531325)
[»] chr6 (3 HSPs)
chr6 (173-223)||(28970158-28970207)
chr6 (173-206)||(2945602-2945635)
chr6 (173-202)||(4078672-4078701)
[»] scaffold2098 (1 HSPs)
scaffold2098 (173-206)||(669-702)
[»] chr7 (3 HSPs)
chr7 (173-206)||(20527485-20527518)
chr7 (173-206)||(21285409-21285442)
chr7 (106-147)||(44843756-44843797)
[»] chr1 (4 HSPs)
chr1 (173-206)||(9527432-9527465)
chr1 (173-206)||(47939254-47939287)
chr1 (173-205)||(17954915-17954947)
chr1 (116-200)||(36824311-36824395)
[»] chr8 (1 HSPs)
chr8 (173-225)||(10292340-10292391)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 7623064 - 7622843
Alignment:
Q  22 ttggggacaagatatatattgaagaatgtgtacatgattttaaaaaataattttagagtattaannnnnnnnggtcgagtaacatagtagttagaattca 121  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  7623064 ttggggacaagatatatattgaagaatgtatacatgattttaaaaaataattttagagtattaattttttttagtcgagtaacatagtagttagaattca 7622965  T
Q  122 cattataagatgaataaatgaggtgtgtgaagatcaaacttcaacatttgaatataacaatgcattgtccatgccaactgagctaacgctcacggagact 221  Q
    |||||| || ||||||||| |||||| ||| | |||||| ||||||| ||||||||||||| |||||||| ||  ||||||||||||||||||||| |||    
T  7622964 cattatgaggtgaataaataaggtgtctgaggttcaaacctcaacatctgaatataacaattcattgtccctgttaactgagctaacgctcacggaaact 7622865  T
Q  222 ttttataatattgctagtataa 243  Q
    ||||||| ||||||||||||||    
T  7622864 ttttatagtattgctagtataa 7622843  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 40557620 - 40557671
Alignment:
Q  174 tataacaatgcattgtccatgccaactgagctaacgctcacggagacttttta 226  Q
    |||||||||||||||||| ||||||||||| | | ||||||||||||||||||    
T  40557620 tataacaatgcattgtccttgccaactgag-ttatgctcacggagacttttta 40557671  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 14271923 - 14271957
Alignment:
Q  113 tagaattcacattataagatgaataaatgaggtgt 147  Q
    |||||||||| ||||||||||||||||||||||||    
T  14271923 tagaattcaccttataagatgaataaatgaggtgt 14271957  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 44953157 - 44953191
Alignment:
Q  113 tagaattcacattataagatgaataaatgaggtgt 147  Q
    |||||||||||||||||| ||||||||||||||||    
T  44953157 tagaattcacattataaggtgaataaatgaggtgt 44953191  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 43774224 - 43774191
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  43774224 atataacaatgcattgtccctgccaactgagcta 43774191  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 55195855 - 55195891
Alignment:
Q  111 gttagaattcacattataagatgaataaatgaggtgt 147  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  55195855 gttataattcaccttataagatgaataaatgaggtgt 55195891  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 9963522 - 9963422
Alignment:
Q  106 tagtagttagaattcacattataagatgaataaatgaggtgtgtgaagatcaaacttcaacatttgaatataacaatgcattgtccatgccaactgagct 205  Q
    |||| |||||||||||| ||||||| ||||||| || || ||  |||| || |||  ||||   || ||||||||||||||||||| |||||||||||||    
T  9963522 tagtggttagaattcactttataaggtgaataagtggggggtccgaagttcgaaccccaacccctgcatataacaatgcattgtccctgccaactgagct 9963423  T
Q  206 a 206  Q
    |    
T  9963422 a 9963422  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 3102183 - 3102216
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  3102183 atataacaatgcattgtccctgccaactgagcta 3102216  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 13754108 - 13754071
Alignment:
Q  110 agttagaattcacattataagatgaataaatgaggtgt 147  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  13754108 agttagaattcaccttataagatgaataaatggggtgt 13754071  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 26409285 - 26409246
Alignment:
Q  181 atgcattgtccatgccaactgagctaacgctcacggagact 221  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  26409285 atgcattgtccataccaactgagctaa-gctcacggagact 26409246  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 22478723 - 22478770
Alignment:
Q  100 gtaacatagtagttagaattcacattataagatgaataaatgaggtgt 147  Q
    ||||| ||||||||||||||||| ||||||| |||||||||| |||||    
T  22478723 gtaacctagtagttagaattcaccttataaggtgaataaatggggtgt 22478770  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 9084798 - 9084765
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  9084798 atataacaatgcattgtccctgccaactgagcta 9084765  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 31480310 - 31480277
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  31480310 atataacaatgcattgtccctgccaactgagcta 31480277  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 36008314 - 36008281
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  36008314 atataacaatgcattgtccctgccaactgagcta 36008281  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 48512238 - 48512205
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  48512238 atataacaatgcattgtccctgccaactgagcta 48512205  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 56531292 - 56531325
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  56531292 atataacaatgcattgtccttgccaactgagcta 56531325  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 28970207 - 28970158
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagctaacgctcacggagacttt 223  Q
    |||||||||| |||||||| ||||||||||||| |||||||||| ||||||    
T  28970207 atataacaatacattgtccctgccaactgagct-acgctcacggggacttt 28970158  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 2945635 - 2945602
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  2945635 atataacaatgcattgtccctgccaactgagcta 2945602  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 202
Target Start/End: Complemental strand, 4078701 - 4078672
Alignment:
Q  173 atataacaatgcattgtccatgccaactga 202  Q
    ||||||||||||||||||||||||||||||    
T  4078701 atataacaatgcattgtccatgccaactga 4078672  T

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Target: scaffold2098 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold2098
Description:

Target: scaffold2098; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 669 - 702
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  669 atataacaatgcattgtccctgccaactgagcta 702  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 20527485 - 20527518
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  20527485 atataacaatgcattgtccctgccaactgagcta 20527518  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 21285409 - 21285442
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  21285409 atataacaatgcattgtccctgccaactgagcta 21285442  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 44843797 - 44843756
Alignment:
Q  106 tagtagttagaattcacattataagatgaataaatgaggtgt 147  Q
    |||| |||||||||||| |||||||||||||||||| |||||    
T  44843797 tagtggttagaattcaccttataagatgaataaatggggtgt 44843756  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 9527465 - 9527432
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  9527465 atataacaatgcattgtccctgccaactgagcta 9527432  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 47939254 - 47939287
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagcta 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  47939254 atataacaatgcattgtccctgccaactgagcta 47939287  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 17954915 - 17954947
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagct 205  Q
    ||||||||||||||||||| |||||||||||||    
T  17954915 atataacaatgcattgtccctgccaactgagct 17954947  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 36824395 - 36824311
Alignment:
Q  116 aattcacattataagatgaataaatgaggtgtgtgaagatcaaacttcaacatttgaatataacaatgcattgtccatgccaact 200  Q
    ||||||| || ||||||||||||||||||||| ||| | || ||||||||| | |  ||||||||||  ||| ||| ||||||||    
T  36824395 aattcactttttaagatgaataaatgaggtgtctgaggttcgaacttcaacttctacatataacaatatattatccctgccaact 36824311  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 10292391 - 10292340
Alignment:
Q  173 atataacaatgcattgtccatgccaactgagctaacgctcacggagacttttt 225  Q
    |||||| |||||||||||| ||||||||||||| | |||||||| ||||||||    
T  10292391 atataataatgcattgtccctgccaactgagct-atgctcacggggacttttt 10292340  T

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