View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_low_3 (Length: 635)
Name: NF13850_low_3
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 69 - 449
Target Start/End: Complemental strand, 33721980 - 33721595
Alignment:
| Q |
69 |
atagagtttgtttgaagaaaacaagagttatgagtgttgtgaagagtgaagacaagtttagtagtatatttattcacggagaagccaatgctactacgca |
168 |
Q |
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| T |
33721980 |
atagagtttgtttgaagaaaacaagagttatgagtgttgtgaagagtgaagacaagtttagtagtatatttattcacggagaagccaatgctactacgca |
33721881 |
T |
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| Q |
169 |
tgaaacgacaccgctttcggttcctctattatttaaa-ggagattgctgataagtggtaccatgc--caagcg--agaaagaatattctcttatttaact |
263 |
Q |
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| T |
33721880 |
tgaaacgacaccgctttcggttcctctattatttaaaaggagattgctgataagtggtaccatgctacaagcgcaagaaagaatattctcttatttaaca |
33721781 |
T |
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| Q |
264 |
agcatgcctcatccacatatacaaaagctagcactatgtcacattcattaataacactttcaaaataatatggataatgtatttatttattagaactcta |
363 |
Q |
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| T |
33721780 |
agcatgcctcatccacatatacaaaagctagcactatgtcacattcattaataatactttcaaaataatatggataatgtatttatttattacaactcta |
33721681 |
T |
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| Q |
364 |
aaatgcaactaagagtcaacacataaatttttgttttcgactatcacatattttgttgtgaagtgatgggaagaactacataaaac |
449 |
Q |
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| T |
33721680 |
aaatgcaactaagagtcaacacataaatttttgttttcgactatcacatattttgttgtgaagtgatgggaataactacataaaac |
33721595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 447 - 618
Target Start/End: Complemental strand, 33721560 - 33721389
Alignment:
| Q |
447 |
aacataatgttgctcttaaaggcattacttaagaactatgatgcaaagataaatatattggcccccctaacagaaacaacgatcattcgaacattttgtc |
546 |
Q |
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| T |
33721560 |
aacataatgttggtcttaaaggcattacttatgaactatgatgcaaagataaacatattgacccccttaaccgaaacaacgatcattctaacattttgtc |
33721461 |
T |
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| Q |
547 |
gtttcaacaaataaatagaaacggttggtagcagaatgtagggctatattacttgatgtttgaggtcagatt |
618 |
Q |
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| T |
33721460 |
gtttcaacaaataaatagaaacggttcgtagcagaatgtagggctatattacttgatgtttgaggtcagatt |
33721389 |
T |
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