View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_low_30 (Length: 225)
Name: NF13850_low_30
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_30 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 26677671 - 26677886
Alignment:
| Q |
8 |
agataatacttcatagtttataagcgaagataatactcacttaatcggtttttatgttcaaccacaaattataaaatcatgtacattctaagcaggtaaa |
107 |
Q |
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| T |
26677671 |
agataatatttcatagtttataagcgaagataatactcacttaatcggtttttatgttcaaccacaaattataaaatcatgtacattttctgcaggtaaa |
26677770 |
T |
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| Q |
108 |
ttccaccaccggttcatttatttcttcgtaaagttcacgttcgttgttcaacttttcctcactgttggaatatgatgtgtcgtgtaggagtgacatgaat |
207 |
Q |
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| T |
26677771 |
ttccaccaccggttcatttatttcttcgtaaagttcacgt--gttgttcaacttttcctcactgttggaatatgatgtgtcgtgtaggagtgacatgaat |
26677868 |
T |
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| Q |
208 |
agtggaacttcctctttc |
225 |
Q |
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| T |
26677869 |
agtggaacttcctctttc |
26677886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 26688524 - 26688352
Alignment:
| Q |
54 |
ggtttttatgttcaaccacaaattataaaatcatgtacattctaagcaggtaaattccaccaccggttcatttatttcttcgtaaagttcacgttcg--t |
151 |
Q |
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| T |
26688524 |
ggtttttatgctcaaccacaaattataaaatcatgtatatttcctgcatgtaaattccaccaccggttcatttatttcttcgtaaagttcacgttcgaat |
26688425 |
T |
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| Q |
152 |
tgttcaacttttcctcactgttggaatatgatgtgtcgtgtaggagtgacatgaatagtggaacttcctctttc |
225 |
Q |
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| T |
26688424 |
tattcaacttttccttactgttggaatgtgatgtgccgtgtaggagtgacataaatagtgg-tcttcctctttc |
26688352 |
T |
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