View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_low_34 (Length: 203)
Name: NF13850_low_34
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 45934801 - 45934959
Alignment:
| Q |
32 |
acaactcgttttctttgctctacattaatttttgcaagttttaccccactgtctaactatct-caggnnnnnnnnatcgtaggtattcacactttcttgg |
130 |
Q |
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| T |
45934801 |
acaactcgttttctttgctctacattaatttttgcaagttttactccactgtctaactatcttcaggttttttttatcgtaggtattcgcactttcttgg |
45934900 |
T |
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| Q |
131 |
gcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgtatatgcaaaacc |
189 |
Q |
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| T |
45934901 |
gcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgtatatgcaaaacc |
45934959 |
T |
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Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 15817023 - 15817183
Alignment:
| Q |
18 |
aatattctggtacaacaactcgttttctttgctctacattaatttttgcaagttttaccccactgtctaactatctcaggnnnnnnnnatcgtaggtatt |
117 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||||||||||||| ||||||||| | ||||||||| || || ||| |||||||| |
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| T |
15817023 |
aatattctggtacaacaacttgttttctttgttctaccttaatttttgcaaattttacccctccgtctaactacctttggtttttcttatcataggtatt |
15817122 |
T |
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| Q |
118 |
cacactttcttgggcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgta |
178 |
Q |
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| T |
15817123 |
cgcactttcttgggtagttttggttatagtccttatcgtcttaaaggtatgtacttttgta |
15817183 |
T |
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