View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_low_5 (Length: 559)
Name: NF13850_low_5
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Original strand, 7023304 - 7023776
Alignment:
| Q |
14 |
ctagcaagggctgttggagggaagacagttgaggaagtgaaaaagcattatgagatgttagttgaagatttgaagcaaattgaggaaggtcatgttcctt |
113 |
Q |
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| T |
7023304 |
ctagcaagggctgttggagggaagacagttgaggaagtgaaaaggcattatgagatgttagttgaagatttgaagcaaattgaggaaggtcatgttcctt |
7023403 |
T |
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| Q |
114 |
tgcccaaatacagaaatgctgcaacaattaaaggttacaattacagtgacgaagaacaaagg----taatttttactacttaatccttnnnnnnntattg |
209 |
Q |
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| T |
7023404 |
tgcccaaatacagaaatgctgcaacaattaaaggttacaattacagtgacgaagaacaaaggtaattaatttttactacttaatccttaaaaaaatattg |
7023503 |
T |
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| Q |
210 |
tagatagacaaaatataatagtcattgaaaactcataaagagatagatgatgagtcagggtttgaaaccaggtcactttgttcgtcttacttaatcgtta |
309 |
Q |
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| T |
7023504 |
tagatagataaaatataatagtcattgaaaactcataaagagatagatgatgagtcagggtttgaaaccatgtcactttgttcatcttacttaatcgtta |
7023603 |
T |
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| Q |
310 |
ttttgtcattagcaatcccttgcttatggttcaatctgacactattagataaaattaaattagcaataaaaatttaaagagagataatatgaaatatgaa |
409 |
Q |
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| T |
7023604 |
ttttgtcattagcaatcccttgcttatggttcaatctgacac--ttagataaaattaaattagcaataaaaatttaaagagagataatatgaaatatgaa |
7023701 |
T |
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| Q |
410 |
tctattttttcactaaatttaattaggaaaattaaacgagaatttatagttttgtatatctaatttggtctataa |
484 |
Q |
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| T |
7023702 |
tctattttttcactaaatttaattaggaaaattaaacgagaatttatagttttgtatatctaatttggtctataa |
7023776 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 52365442 - 52365486
Alignment:
| Q |
23 |
gctgttggagggaagacagttgaggaagtgaaaaagcattatgag |
67 |
Q |
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| T |
52365442 |
gctgtgggagggaagactgttgaagaagtgaaaaggcattatgag |
52365486 |
T |
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