View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13850_low_7 (Length: 483)
Name: NF13850_low_7
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_7 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 467
Target Start/End: Original strand, 4883655 - 4884114
Alignment:
| Q |
12 |
attattctgattagagaaatattaatgcataagggagagccaaaccatataatatttgtgtagaccaaatacaatcttctgattagagaaatttttctag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4883655 |
attattctgattagagaaatattaatgcagaagggagagccaaaccatataatatttgagtagaccaaatacaatcttctgattagagaaatttttctag |
4883754 |
T |
|
| Q |
112 |
aaatccaatcaataaaggatatattattttgtgtattaatcctaacaatattctatggaatttgaaaacaaggcaaagctatactag----tagccaagt |
207 |
Q |
| |
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| |||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||| ||| ||||||||| ||||||||| |
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| T |
4883755 |
acatccaatcaataaaggatatattattccttgtattagtcctaaaaatattctatggaacttgaaaacaagagaaatctatactagctagtagccaagt |
4883854 |
T |
|
| Q |
208 |
aggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtcacacatatacttttatctttttattaccagccataattaatttcctaataggg |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4883855 |
aggtccttcatcattgactgtgggagtgaccttatattgaaaaagtcacacatatacttttatctttttattaccagccataattaatttcctaataggg |
4883954 |
T |
|
| Q |
308 |
ctaattgaaagcgagatgaggtagaggattcaaattcttcattgattgattgcnnnnnnnnnnnngacccatgttgctttatgatttgagtgagtttgag |
407 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
4883955 |
ctaattgaaaccgagatgaggtagaggattcaaattcttcattgattgattgcttttttatttttgacccatgttgctttatgatttgagtgagtttgtg |
4884054 |
T |
|
| Q |
408 |
gctgttagttggatggcattaagagtggagatttcatgtggatagaatttgggatcatgg |
467 |
Q |
| |
|
|||||||| || |||| ||| ||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
4884055 |
gctgttaggtgaatggaattgagaatggggatttcatgtggatagaatttgggatcatgg |
4884114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 4924175 - 4924481
Alignment:
| Q |
12 |
attattctgattagagaaatattaatgcataagggagagccaaaccatataatatttgtgtagaccaa-atacaatcttctgattagagaaatttttcta |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
4924175 |
attattctgattagagaaat--taatgcataagggagagccaaaccatataatatttgtgcagaccaatatacaatcttctgattagagaaatttt-cta |
4924271 |
T |
|
| Q |
111 |
gaaatccaatcaat---aaaggatatattattttgtgtattaatcctaacaatattctatggaatttgaaaacaaggcaaagctatactagtagccaagt |
207 |
Q |
| |
|
|| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
4924272 |
gacatccaatcaattataaaggatatattatttcgtgtattaatcctaacaatattctatggaacttgaaaacaagccaaagctatactagtagccaagt |
4924371 |
T |
|
| Q |
208 |
aggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtcacacatatacttttatctttttattaccagccataattaatttcctaataggg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
4924372 |
aggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtcacacatgtttttttatctttttattaccagccatgactaatttcctaataggg |
4924471 |
T |
|
| Q |
308 |
ctaattgaaa |
317 |
Q |
| |
|
||||||||| |
|
|
| T |
4924472 |
ttaattgaaa |
4924481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 149 - 467
Target Start/End: Original strand, 4905025 - 4905343
Alignment:
| Q |
149 |
aatcctaacaatattctatggaatttgaaaacaaggcaaagctatactagtagccaagtaggtccttcatcattgactgtgggtgtgaccttatattgaa |
248 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4905025 |
aatcctaacaatattctatggaacttgaaaacaagccaaagctatactagaagccaagtaggtccttcatcattgactgtgggtgtgaccttatattgaa |
4905124 |
T |
|
| Q |
249 |
aaagtcacacatatacttttatctttttattaccagccataattaatttcctaatagggctaattgaaagcgagatgaggtagaggattcaaattcttca |
348 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||||| ||||| | |||||| |||||| | |
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|
| T |
4905125 |
aaagtcacacatgtttttttatctttttattaccagccatgactaatttcctaatagggttaattgaaaccgagagcaggtacatgattcagattcttta |
4905224 |
T |
|
| Q |
349 |
ttgattgattgcnnnnnnnnnnnngacccatgttgctttatgatttgagtgagtttgaggctgttagttggatggcattaagagtggagatttcatgtgg |
448 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| || |||| ||| ||| |||||||||||||||| |
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|
| T |
4905225 |
ttgattgattgcttttttatttttgacccatgttgctctatgatttgagtgagtttgtggctgttaggtgaatggaattgagaatggagatttcatgtgg |
4905324 |
T |
|
| Q |
449 |
atagaatttgggatcatgg |
467 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
4905325 |
atagaatttgggatcatgg |
4905343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 32 - 340
Target Start/End: Complemental strand, 4646631 - 4646326
Alignment:
| Q |
32 |
attaatgcataagggagagccaaaccatataatatttgtgtagaccaaat-acaatcttctgattagagaaatttttctagaaatccaatcaataaagga |
130 |
Q |
| |
|
||||| ||| ||||||| |||||||||||| ||||||||| ||||| | | ||||||||||||||||||||||||| | ||| |||||||||| |||||| |
|
|
| T |
4646631 |
attaaagcacaagggagcgccaaaccatatcatatttgtgcagaccgatttacaatcttctgattagagaaattttcc-agacatccaatcaaaaaagga |
4646533 |
T |
|
| Q |
131 |
tatattattttgtgtattaatcctaacaatattctatggaatttgaaaacaaggcaaagctatactagtagccaagtaggtccttcatcattgactgtgg |
230 |
Q |
| |
|
||||||||| | | | || | ||||||||||||| || | || ||||||||||||||||||||||||| ||||||||||||||| || ||||| |
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|
| T |
4646532 |
tatattattccgcttttc--tcaaagttatattctatggaaatttagaaaaaggcaaagctatactagtagccaaataggtccttcatcatcgagtgtgg |
4646435 |
T |
|
| Q |
231 |
gtgtgaccttatattgaaaaagtcacacatatacttttatctttttattaccagccataattaatttcctaatagggctaattgaaagcgagatgaggta |
330 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||| ||||||||||||||||||| |||||||||||||||||||||||||||| || | |||||| |
|
|
| T |
4646434 |
gtgtgaccttatattgaaaaagtcacgcatgca-ttttttctttttattaccagccatgattaatttcctaatagggctaattgaaactgacaggaggta |
4646336 |
T |
|
| Q |
331 |
gaggattcaa |
340 |
Q |
| |
|
|||| ||||| |
|
|
| T |
4646335 |
gaggtttcaa |
4646326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 4904862 - 4905015
Alignment:
| Q |
12 |
attattctgattagagaaatattaatgcataagggagagccaaaccatataatatttgtgtagaccaa-atacaatcttctgattagagaaatttttcta |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4904862 |
attattctgattagagaaat--taatgcataagggagagccaaaccatataatatttgtgcagaccaatatacaatcttctgattagagaaa-ttttcta |
4904958 |
T |
|
| Q |
111 |
gaaatccaatca---ataaaggatatattattttgtgtattaatcctaacaatattc |
164 |
Q |
| |
|
|| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4904959 |
gacatccaatcaattataaaggatatattatttcgtgtattaatcctaacaatattc |
4905015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 359
Target Start/End: Original strand, 4874885 - 4875039
Alignment:
| Q |
208 |
aggtccttcatcattgactgtgggtgtgaccttatattgaaaa-agtcacacatatacttttatctttttattaccagccataattaatttcctaatagg |
306 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| | |||| |||||||||||| |||| |||||||||| ||| | | |||||||||||||||| |
|
|
| T |
4874885 |
aggtccttcatcatcgagtgtgggtgtgaccttatactcaaaaaagtcacacatatcattttttctttttattgccaagcttgattaatttcctaataga |
4874984 |
T |
|
| Q |
307 |
gctaattgaaagcgagatgaggtaga--ggattcaaattcttcattgattgattg |
359 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
4874985 |
gctaattgaaaccgagaggaggtagatcggatttaaattcttcattgattgattg |
4875039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 373 - 467
Target Start/End: Original strand, 4924515 - 4924609
Alignment:
| Q |
373 |
gacccatgttgctttatgatttgagtgagtttgaggctgttagttggatggcattaagagtggagatttcatgtggatagaatttgggatcatgg |
467 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||| || |||| ||| ||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
4924515 |
gacccatgttgctctatgatttgagtgagtttgtggctgttaggtgaatggaattgagaatggagatttcatgtggatagtatttgggatcatgg |
4924609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 4893691 - 4893795
Alignment:
| Q |
220 |
attgactgtgggtgtgaccttatattgaaaa-agtcacacatatacttttatctttttattaccagccataattaatttcctaatagggctaattgaaag |
318 |
Q |
| |
|
||||| |||||||||||||||||| |||||| |||||||||||| |||| || ||||||| || | | | |||||||||||||||| ||||||||||| |
|
|
| T |
4893691 |
attgagtgtgggtgtgaccttatactgaaaaaagtcacacatatcattttttcattttattgcctggcttgattaatttcctaatagagctaattgaaac |
4893790 |
T |
|
| Q |
319 |
cgaga |
323 |
Q |
| |
|
||||| |
|
|
| T |
4893791 |
cgaga |
4893795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 4874084 - 4874147
Alignment:
| Q |
297 |
tcctaatagggctaattgaaagcgagatgaggtaga--ggattcaaattcttcattgattgatt |
358 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4874084 |
tcctaatagagataattgaaaccgagatgaggtagatcggatttaaattcttcattgattgatt |
4874147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 4874038 - 4874085
Alignment:
| Q |
207 |
taggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtc |
254 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| | |||||||| |
|
|
| T |
4874038 |
taggtccttcatcatcgactgtaggtgtgaccttatactaaaaaagtc |
4874085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 9112652 - 9112571
Alignment:
| Q |
242 |
tattgaaaaagtcacacatatacttttatctttttattaccagccataattaatttcctaatagggctaattgaaagcgaga |
323 |
Q |
| |
|
||||||||||||||| |||| | ||| ||||||||||| ||| | | |||||||||||||||||||||||||||| ||||| |
|
|
| T |
9112652 |
tattgaaaaagtcacgcatagaggtttttctttttattaacaggcttgattaatttcctaatagggctaattgaaatcgaga |
9112571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 9112475 - 9112437
Alignment:
| Q |
429 |
agagtggagatttcatgtggatagaatttgggatcatgg |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9112475 |
agagtggagatttcatgtggatagaatttgtgatcatgg |
9112437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 9129922 - 9129862
Alignment:
| Q |
197 |
agtagccaagtaggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtcaca |
257 |
Q |
| |
|
||||| || |||||||||||||||| || ||||||| | ||||||||| |||||||||||| |
|
|
| T |
9129922 |
agtagacatgtaggtccttcatcatcgagtgtgggtataaccttatatggaaaaagtcaca |
9129862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 32270294 - 32270215
Alignment:
| Q |
238 |
cttatattgaaaaagtcacacatatacttttatctttttattaccagccataattaatttcctaatagggctaattgaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||||| |||| | | | |||||||| ||||||||||| ||||||| |
|
|
| T |
32270294 |
cttatattgaaaaagtcacacatatctttcttcctttttactaccggacttgattaattttctaatagggctgattgaaa |
32270215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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