View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_low_8 (Length: 474)
Name: NF13850_low_8
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Complemental strand, 53618670 - 53618223
Alignment:
| Q |
9 |
ccaagaatatattaaaactagagtgatgtaatgaaagaatggaaataatgaaatagtatgcataacttcttaaaagaaacataaaacagtctaggaaagc |
108 |
Q |
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| T |
53618670 |
ccaataatatattaaaactagagtgatgtaatgaaagaatggaaataatgaaatagtatgcataacttcttaaaagaaacataaaaaagtctaggaaagc |
53618571 |
T |
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| Q |
109 |
tactaaaccatagcataaagcatgcctgctgcttgaaaatgctaagcttactgctggcatatcgaggtgacaacacacatgaaactgaagaatgcttgaa |
208 |
Q |
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| T |
53618570 |
tactaaaccatagcataaagcatgcctgctgcttgaaaatgctaagcttactgctggcatatcgaggtgacaacacacatgaaactgaagaatgcttgaa |
53618471 |
T |
|
| Q |
209 |
aaactttcgagtttcttcatcgtgagtttgcattattccattctgcaacaaaattattaactagtaaggttcggaaaaggctcaacaaacaccaaatgaa |
308 |
Q |
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| T |
53618470 |
aaactttcgagtttcttcatcatgagtttgcattattccattctgcaacaaaattattaactagtaaggttcggaaaaggctcaacaaacaccaaatgaa |
53618371 |
T |
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| Q |
309 |
acttggcagcaagccaaacagagtaaatatgcccaaacggacaaaccagtaactctgttcaagtaacttgtatgtataaaatccattaacagtaaaagtt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
53618370 |
acttggcagcaagccaaacagagtaaatatgcccaaacggacaaaccagtaactctgttcaagtaacttgtatgtataaaatccatcaacagtaaaagtt |
53618271 |
T |
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| Q |
409 |
aatgtaaaatgaagatgacaatagctgagtgtggactcattagagtat |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53618270 |
aatgtaaaatgaagatgacaatagctgagtgtggactcattagagtat |
53618223 |
T |
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