View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13850_low_9 (Length: 471)
Name: NF13850_low_9
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 5 - 453
Target Start/End: Original strand, 11390708 - 11391156
Alignment:
| Q |
5 |
gattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggtgtttttcttttcagagc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390708 |
gattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggtgtttttcttttcagagc |
11390807 |
T |
|
| Q |
105 |
tgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgcttctgctgtgtattgtgcaagaattgttattggaaggtatccttt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390808 |
tgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgcttctgctgtgtattgtgcaagaattgttattggaaggtatccttt |
11390907 |
T |
|
| Q |
205 |
atggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgattgaattgtgcaatgaaatttgt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11390908 |
atggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgatagaattgtgcaatgaaatttgt |
11391007 |
T |
|
| Q |
305 |
agagatggaaccatgcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgtgttgctaaaagagaaatctccaaaaaacttttttatc |
404 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11391008 |
agagatggaacaatgcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgtgttgctaaaagagaaatctccaaaaaacttttttatc |
11391107 |
T |
|
| Q |
405 |
atagaatttgtctcaatatgggacaatatttttcttttcagtttattaa |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11391108 |
atagaatttgtctcaatatgggacaatatttttcttttcagattattaa |
11391156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 5 - 413
Target Start/End: Complemental strand, 11419916 - 11419508
Alignment:
| Q |
5 |
gattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggtgtttttcttttcagagc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11419916 |
gattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggtgtttttcttttcagagc |
11419817 |
T |
|
| Q |
105 |
tgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgcttctgctgtgtattgtgcaagaattgttattggaaggtatccttt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11419816 |
tgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgcttctgctgtgtattgtgcaagaattgttattggaaggtatccttt |
11419717 |
T |
|
| Q |
205 |
atggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgattgaattgtgcaatgaaatttgt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
11419716 |
atggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgatagaattctgcaatgaaatttgt |
11419617 |
T |
|
| Q |
305 |
agagatggaaccatgcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgtgttgctaaaagagaaatctccaaaaaacttttttatc |
404 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11419616 |
agagatggaacaatgcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgttttgctaaaagagaaatctccaaaaaacttttttatc |
11419517 |
T |
|
| Q |
405 |
atagaattt |
413 |
Q |
| |
|
|||||||| |
|
|
| T |
11419516 |
ctagaattt |
11419508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 24614659 - 24614827
Alignment:
| Q |
63 |
aagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgcttc |
162 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| || ||||||||||||||| || | || |||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
24614659 |
aagacaagatcatggagaacatggtgtttttcttctctgagctgagcttgacaaatcaatccattgtgtgcgactataagccttcaatgattgctgcttg |
24614758 |
T |
|
| Q |
163 |
tgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac |
231 |
Q |
| |
|
| | |||||||||||||| ||||| ||||||||||||| || |||| ||||||||||||||| ||||| |
|
|
| T |
24614759 |
ttccgtgtattgtgcaaggtttgttgttggaaggtatcccttttggagcaatgatttgaagatgtgtac |
24614827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 24109012 - 24108840
Alignment:
| Q |
59 |
gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg |
158 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||||||||||||| || || ||||||||| || |||| |||||||| |||||||| ||||| |||||||||| |
|
|
| T |
24109012 |
gatgaagataagatcatggagaagatggtgtttttcttttctgaactcagcttgacaaatcattctattgtgtgcgactataagccttcaatgattgctg |
24108913 |
T |
|
| Q |
159 |
cttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac |
231 |
Q |
| |
|
||| | | |||||||||||||| ||||| ||| ||||||||| || |||| ||||||||||||||| ||||| |
|
|
| T |
24108912 |
cttgttccgtgtattgtgcaaggtttgttgttgaaaggtatcccttttggagcaatgatttgaagatgtgtac |
24108840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 59 - 228
Target Start/End: Complemental strand, 24116719 - 24116550
Alignment:
| Q |
59 |
gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg |
158 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||| || | ||||||||| || |||| |||||||| ||||| || ||||| ||||||||| |
|
|
| T |
24116719 |
gatgaagacaagatcatggagaatatggtgtttttcttttcggaagtcagcttgacaaatcattctattgtgtgcgactacaagccttcattgattgctg |
24116620 |
T |
|
| Q |
159 |
cttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatg |
228 |
Q |
| |
|
||| | | |||||||||||||| ||||| ||| ||||||||| || |||| |||||||||||||||||| |
|
|
| T |
24116619 |
cttgttccgtgtattgtgcaaggtttgttgttgaaaggtatcccttttggagcaatgatttgaagatatg |
24116550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 23689756 - 23689928
Alignment:
| Q |
59 |
gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg |
158 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||| || || ||||||||| || |||| ||||| || ||||| || ||||| ||||||||| |
|
|
| T |
23689756 |
gatgaagacaagatcatggagaacatggtgtttttcttttcggaactcagcttgacaaatcattccattgtctgcgactacaagccttcattgattgctg |
23689855 |
T |
|
| Q |
159 |
cttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac |
231 |
Q |
| |
|
||| | | |||||||||||||| ||||| ||| ||||||||| || |||| ||||||||||||||| ||||| |
|
|
| T |
23689856 |
cttgttccgtgtattgtgcaaggtttgttgttgaaaggtatcccttttggagcaatgatttgaagatgtgtac |
23689928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 24061993 - 24062165
Alignment:
| Q |
59 |
gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg |
158 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||| || || ||||||||| || |||| ||||| || ||||| || ||||| ||||||||| |
|
|
| T |
24061993 |
gatgaagacaagatcatggagaacatggtgtttttcttttcggaactcagcttgacaaatcattccattgtctgcgactacaagccttcattgattgctg |
24062092 |
T |
|
| Q |
159 |
cttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac |
231 |
Q |
| |
|
||| | | |||||||||||||| ||||| ||| ||||||||| || |||| ||||||||||||||| ||||| |
|
|
| T |
24062093 |
cttgttccgtgtattgtgcaaggtttgttgttgaaaggtatcccttttggagcaatgatttgaagatgtgtac |
24062165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 23693213 - 23693386
Alignment:
| Q |
58 |
ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct |
157 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
23693213 |
ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct |
23693312 |
T |
|
| Q |
158 |
gcttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac |
231 |
Q |
| |
|
|||| ||| |||||| |||||| || || ||||||||||||| || |||| |||||||||||| || ||||| |
|
|
| T |
23693313 |
gcttgtgccgtgtatcttgcaaggtttattgttggaaggtatcccttttggagcaatgatttgaaaatgtgtac |
23693386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 23711653 - 23711826
Alignment:
| Q |
58 |
ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct |
157 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
23711653 |
ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct |
23711752 |
T |
|
| Q |
158 |
gcttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac |
231 |
Q |
| |
|
|||| ||| |||||| |||||| || || ||||||||||||| || |||| |||||||||||| || ||||| |
|
|
| T |
23711753 |
gcttgtgccgtgtatcttgcaaggtttattgttggaaggtatcccttttggagcaatgatttgaaaatgtgtac |
23711826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 23730109 - 23730282
Alignment:
| Q |
58 |
ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct |
157 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
23730109 |
ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct |
23730208 |
T |
|
| Q |
158 |
gcttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac |
231 |
Q |
| |
|
|||| ||| |||||| |||||| || || ||||||||||||| || |||| |||||||||||| || ||||| |
|
|
| T |
23730209 |
gcttgtgccgtgtatcttgcaaggtttattgttggaaggtatcccttttggagcaatgatttgaaaatgtgtac |
23730282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 23748564 - 23748737
Alignment:
| Q |
58 |
ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct |
157 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
23748564 |
ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct |
23748663 |
T |
|
| Q |
158 |
gcttctgctgtgtattgtgcaagaattgttattggaaggtatcctttatggaacaatgatttgaagatatgtac |
231 |
Q |
| |
|
|||| ||| |||||| |||||| || || ||||||||||||| || |||| |||||||||||| || ||||| |
|
|
| T |
23748664 |
gcttgtgccgtgtatcttgcaaggtttattgttggaaggtatcccttttggagcaatgatttgaaaatgtgtac |
23748737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23693141 - 23693191
Alignment:
| Q |
1 |
acttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa |
51 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
23693141 |
acttggttggattttaacagttccaacaccttatgtttttcttgttagaaa |
23693191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23711581 - 23711631
Alignment:
| Q |
1 |
acttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa |
51 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
23711581 |
acttggttggattttaacagttccaacaccttatgtttttcttgttagaaa |
23711631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23730037 - 23730087
Alignment:
| Q |
1 |
acttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa |
51 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
23730037 |
acttggttggattttaacagttccaacaccttatgtttttcttgttagaaa |
23730087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23748492 - 23748542
Alignment:
| Q |
1 |
acttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa |
51 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
23748492 |
acttggttggattttaacagttccaacaccttatgtttttcttgttagaaa |
23748542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 23693424 - 23693492
Alignment:
| Q |
275 |
gttatgattgaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
343 |
Q |
| |
|
|||||||| |||| ||||| | |||||||| |||| |||| |||| | ||||||| ||||||||||||| |
|
|
| T |
23693424 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23693492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 23711864 - 23711932
Alignment:
| Q |
275 |
gttatgattgaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
343 |
Q |
| |
|
|||||||| |||| ||||| | |||||||| |||| |||| |||| | ||||||| ||||||||||||| |
|
|
| T |
23711864 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23711932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 23730320 - 23730388
Alignment:
| Q |
275 |
gttatgattgaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
343 |
Q |
| |
|
|||||||| |||| ||||| | |||||||| |||| |||| |||| | ||||||| ||||||||||||| |
|
|
| T |
23730320 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23730388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 23748775 - 23748843
Alignment:
| Q |
275 |
gttatgattgaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
343 |
Q |
| |
|
|||||||| |||| ||||| | |||||||| |||| |||| |||| | ||||||| ||||||||||||| |
|
|
| T |
23748775 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23748843 |
T |
|
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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 24108802 - 24108734
Alignment:
| Q |
275 |
gttatgattgaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
343 |
Q |
| |
|
|||||||| || | ||||| | ||||||||||||||||| |||| | ||||||| ||||||||||||| |
|
|
| T |
24108802 |
gttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaagaaattttcaagt |
24108734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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