View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_high_16 (Length: 250)
Name: NF13851_high_16
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 37799421 - 37799182
Alignment:
| Q |
5 |
tgtcgaagaaaatgaaactcagaggccaaccatgcgtcaggcagttcaaattctcgaggggaccttgaatgtgaatttgccaccaattccaagattcaat |
104 |
Q |
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| T |
37799421 |
tgtccaagaaaatgaaactcagaggccaaccatgcgtcaggcagttcaaattctcgaggggaccttgaatgtgaatttgccaccaattccaagattcaat |
37799322 |
T |
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| Q |
105 |
caagtgtttgtagataactaagagaattttctctaccaaattcacaggccaaaagatatgcttcaacatcttctcaggccaaaagcaatatctcatcatc |
204 |
Q |
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| T |
37799321 |
caagtgtttgtagataactaagagaattttctctaccaaattcacaggccaaaaggtatgcttcaacatcttctcaggccaaaagcaatatctcatcatc |
37799222 |
T |
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| Q |
205 |
tagcttcaagtctttgttagaaaattaggatggtttattg |
244 |
Q |
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| T |
37799221 |
tagcttcaagtctttgttagaaaattaggatggtttattg |
37799182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 37766325 - 37766417
Alignment:
| Q |
5 |
tgtcgaagaaaatgaaactcagaggccaaccatgcgtcaggcagttcaaattctcgaggggaccttgaatgtgaatttgccaccaattccaag |
97 |
Q |
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|||| |||| ||||||| ||| |||||||| ||| |||||| |||||||||||| ||||| | ||| | ||||||||||||||||||||||| |
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| T |
37766325 |
tgtccaagacaatgaaaatcaaaggccaacaatgggtcaggtagttcaaattcttgagggaattttggaagtgaatttgccaccaattccaag |
37766417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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