View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_high_2 (Length: 643)
Name: NF13851_high_2
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 17 - 629
Target Start/End: Complemental strand, 44853186 - 44852574
Alignment:
| Q |
17 |
aatttatgtatgaaactaattacattataatttgtagtgctactaagagctacaagctgtaaaatgttttgcatggatactcattctcatgtgttgagct |
116 |
Q |
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| T |
44853186 |
aatttatgtatgaaactaattacattataatttgtagtgctactaagagctacaagctgtaaaatgttttgcatggatactcattctcatgtgttgagct |
44853087 |
T |
|
| Q |
117 |
gaattggatcccctggtatatatagcgaatgttttttaagttttacattttcttgaagacatatttatactctcgggctgcaaattatcagagaaatgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44853086 |
gaattggatcccctggtatatatagcgaatgttttttaagttttacattttcttgaagacatatttatactctcgggctgcaaattatcagagaaatgct |
44852987 |
T |
|
| Q |
217 |
gttatctatattttttcatctatgcaactaggtggctgtgtctggagaacaccgacgaatgttggcattttattaagttcatgattcatgaaatagtatg |
316 |
Q |
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| T |
44852986 |
gttatctatattttttcatctatgcaactaggtgactgtgtctggagaacaccgacgaatgttggcattttattaagttcatgattcatgaaatagtatg |
44852887 |
T |
|
| Q |
317 |
aaaatgtaaatttgaatacgaaaatgttattttgcggtgtttgaagcatacacgtgtaacaaaaaattatttgatccaagctcagatgtaaaaatatggc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44852886 |
aaaatgtaaatttgaatacgaaaatgttattttgcggtgtttgaagcatacacgtgtaacaaaaaattatttgatccaagctcagatgtaaaattatggt |
44852787 |
T |
|
| Q |
417 |
aggaattaacttcagaatgcgaattaactttaagtgctctcattagggtaatttcttatttatccttctgtgtaatgggtggtacagtttttaatttgat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44852786 |
aggaattaacttcagaatgcgaattaactttaagtgctctcattagggtaatttcttatttatccttctgtgtaatgggtggtacagtttttaatttgat |
44852687 |
T |
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| Q |
517 |
tttgagctaatattccatacctcaatgagctttgtgtgttattttgctgcaatgatttgacacctataagttctctcagtggttaatgtaatgatataaa |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44852686 |
tttgagctaatattccatacctcaatgagctttgtgtgttattttgctgcaatgatttgacacctataagttctctcagtggttaatgtaatgatataaa |
44852587 |
T |
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| Q |
617 |
cttcttcacaggt |
629 |
Q |
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| T |
44852586 |
cttcttcacaggt |
44852574 |
T |
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