View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_high_4 (Length: 590)
Name: NF13851_high_4
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 574
Target Start/End: Original strand, 46824063 - 46824613
Alignment:
| Q |
19 |
gtttttaggttcaaattcataattcaattctacttatattctgtggtgtttgacttgatatatacacattgacattggcatgctttgttcagtgtatatg |
118 |
Q |
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| T |
46824063 |
gtttttaggttcaaattcataattcaattctacttatattctgtggtgtttgacttgatatatacacattg------gcatgctttgttcagtgtatatg |
46824156 |
T |
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| Q |
119 |
ctgcgaattattgaagg-ggagtggaactctgtgactctctgcactgtgaaaatgttaaagttactagtttcagtgtcctcttcgtttgctcttatatat |
217 |
Q |
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| T |
46824157 |
ctgcgaattattgaaggtggagtggaactctgtgactctctgcactgtgaaaatgttaaagttactagtttcagtgtcctctttgtttgctcttat---- |
46824252 |
T |
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| Q |
218 |
cctctttccatttattgtttgaaaattaaccacatggaaacattctacctatacattattaatactgcttacattggtagatttcaatttaaaattcaaa |
317 |
Q |
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| T |
46824253 |
cctctttccatttattgtttgaaaattaaccacatggagacattctacctatacattattaatactgctgacattggtaaatttcaatttaaaattcaaa |
46824352 |
T |
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| Q |
318 |
tgtttgagtatttattaatgatgactgcatctaaaatttcttgaaaacgaaagaaaagaaaactggttatcatctctagagaacttttttatttcctttg |
417 |
Q |
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| T |
46824353 |
tgtttgagtatttattaatgatgactgcatctaaaatttcttgaaaacgaaagaaaagaaaacaggttatcatctctagagaacttttttatttcctttg |
46824452 |
T |
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| Q |
418 |
atgggttggttgttggaattc---ttccttnnnnnnnnntccggttttcgg-aaaaaatggacattgttaatccggaatttgatcaagggttaggtttta |
513 |
Q |
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| T |
46824453 |
atgggttggttgttggaattcttttttcattgttaaacatccggttttcggaaaaaaatggacattgttaatccggaatttgatcgagggttaggtttta |
46824552 |
T |
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| Q |
514 |
actaacggtcgcggtctcggtcgccgccgtgttaaggttttcgcgattttagatgtcacag |
574 |
Q |
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| T |
46824553 |
actaacggttgcggtctcggtcgcggccgtgttaatgttttcgcgatttcagatgttacag |
46824613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 562
Target Start/End: Original strand, 21315474 - 21315530
Alignment:
| Q |
506 |
aggttttaactaacggtcgcggtctcggtcgccgccgtgttaaggttttcgcgattt |
562 |
Q |
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| T |
21315474 |
aggttttaaataacggtcacggtctcggtcgcggtcgcgttaaggttttcgcgattt |
21315530 |
T |
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