View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_high_8 (Length: 478)
Name: NF13851_high_8
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 324 - 468
Target Start/End: Original strand, 19003190 - 19003334
Alignment:
| Q |
324 |
tactataactttatatctgtcattttgagcatctccgttaagataatccaataagatatggtcaagacctattgtatactatttgggagttctcagaata |
423 |
Q |
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| T |
19003190 |
tactataactttatatctgtcattttgagcatctccgttaagataatccaataagatacggtcaagacctgttgtatactatttgggagttctcagaata |
19003289 |
T |
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| Q |
424 |
gagaagaataaagacatgtaagtaagagtcgtgtaaagtgatgat |
468 |
Q |
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| T |
19003290 |
gagaagaataaattcatgtaagtaagtgtcgtgcaaagtgatgat |
19003334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 19002069 - 19002202
Alignment:
| Q |
70 |
tattgagccgtaatcgaagacgagctgtaaccggaaacgagtcgtaacaggttgagttgttttcctatgtaatccttttgagagcacggacagagttaga |
169 |
Q |
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| T |
19002069 |
tattgagtcgtaatcgaagacgagccgtaaccggagacgagtcgtaacaggttgagttgttttcttatgtaatcttgttgagagcacggacagagttaga |
19002168 |
T |
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| Q |
170 |
aaggggatcaacatatgccacggtcctcgcaaga |
203 |
Q |
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| T |
19002169 |
aaggggatcagcatatgtcacggtcctcgcaaga |
19002202 |
T |
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