View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_1 (Length: 839)
Name: NF13851_low_1
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 454 - 822
Target Start/End: Original strand, 6031848 - 6032216
Alignment:
| Q |
454 |
tttcttcatgatcctactatttctgttccctacacacaaacaactcataatcatgttccaattaatcctgatacactaacaaattgggctgttgctgact |
553 |
Q |
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| T |
6031848 |
tttcttcatgatcctactatttctgttccctacacacaaacaactcataatcatgttccaattaatcctgatacactaacaaattgggctgttgctgact |
6031947 |
T |
|
| Q |
554 |
atgcagctatgttgaaacaagatctaagtggttcctctcattacaatctctcaaatttgcttacaaagaaaccggtcaagaaacccgctaagaaagacag |
653 |
Q |
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| T |
6031948 |
atgcagctatgttgaaacaagatctaagtggttcttctcattataatctctcaaatttgctcacaaagaaaccggtgaagaaaccggctaagaaagacag |
6032047 |
T |
|
| Q |
654 |
gcatagcaagattcacacatctcaaggtttgagagacagaagggtgagactttccatcgagatcgcgaggaagttcttcgatcttcaagacatgttaggg |
753 |
Q |
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| T |
6032048 |
gcatagcaagattcacacatctcaagggttgagagacagaagggtgagactttccatcgagatcgcgaggaagttcttcgatcttcaagacatgttaggg |
6032147 |
T |
|
| Q |
754 |
tttgacaaagcaagcaacacacttgaatggctcttcaataaatcaaaagaagcaattgaagagttaact |
822 |
Q |
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| T |
6032148 |
tttgacaaagcaagcaacacacttgaatggctcttcaataaatcaaaagaagcaattgaagagttaact |
6032216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 417
Target Start/End: Original strand, 6031379 - 6031802
Alignment:
| Q |
7 |
tattattcttacaatggaaactatgcaaaccaaatctcactttccatatcattgtccaaaatgaaaaccattcacctatcatcatcaatttctttcaaac |
106 |
Q |
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| T |
6031379 |
tattcttcttacaatggaaactatgcaaaccaaatctcactttccatatcattgtccaaaatgaaaacccttcacctatcatcatcaatttctttcaaac |
6031478 |
T |
|
| Q |
107 |
cacnnnnnnnctcttctaggttcactatagtccttaactagtaagtagttaatttcctctaaaaaattaatatccgtgtaaaaaggtgtttttaggaagc |
206 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6031479 |
cactttttttctcttctaggttcactatagtccttaactagtaagtagttcatttcctctaaaaaattaatatccgtgtaaaaaggtgtttttaggaagc |
6031578 |
T |
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| Q |
207 |
tacttcactataacccataagaacatagctatatacctcttgttcnnnnnnngttgtgaaacaagaaactagggtttttc-------------atcttca |
293 |
Q |
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| T |
6031579 |
tacttcactataacccataagaacatagctatatacctcttgttctttttttgttgtgaaacaagaaactagggtttttctccatttgagtcaatcttca |
6031678 |
T |
|
| Q |
294 |
aatgtttccttcaacttattgctctttaggtccttacccttgttataatcctaattcatcttcttcttcacactcataccctccttttacttttcttacc |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6031679 |
aatgtttccttcaacttattgctctttaggtccttacccttgttataatcctaattcatcttcttcttcacactcataccctccttttacttttcttacc |
6031778 |
T |
|
| Q |
394 |
cctgatcaaaatgcttcttctaat |
417 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
6031779 |
cctgatcaaaatgcttcttctaat |
6031802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 643 - 790
Target Start/End: Original strand, 6711171 - 6711318
Alignment:
| Q |
643 |
aagaaagacaggcatagcaagattcacacatctcaaggtttgagagacagaagggtgagactttccatcgagatcgcgaggaagttcttcgatcttcaag |
742 |
Q |
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||||||||| | || ||||||||| |||| ||||||||||||||||| |||| ||||| ||||| || |||||||| | ||||||||||||||||||| |
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| T |
6711171 |
aagaaagaccgacacagcaagatttacacttctcaaggtttgagagatcgaagagtgaggctttcgattgagatcgctcgaaagttcttcgatcttcaag |
6711270 |
T |
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| Q |
743 |
acatgttagggtttgacaaagcaagcaacacacttgaatggctcttca |
790 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||| |||| |
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| T |
6711271 |
acatgttagggtttgacaaagctagcaacacacttgattggcttttca |
6711318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 643 - 797
Target Start/End: Complemental strand, 46795496 - 46795342
Alignment:
| Q |
643 |
aagaaagacaggcatagcaagattcacacatctcaaggtttgagagacagaagggtgagactttccatcgagatcgcgaggaagttcttcgatcttcaag |
742 |
Q |
| |
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|||||||| ||||| || |||||||||||||| || |||||||||||||||||||| ||| | || | || || || || |||||||| |||||||||| |
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| T |
46795496 |
aagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttgatcttcaag |
46795397 |
T |
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| Q |
743 |
acatgttagggtttgacaaagcaagcaacacacttgaatggctcttcaataaatc |
797 |
Q |
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| ||||||| |||||||||| |||| ||||||||||| ||||| |||| |||||| |
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| T |
46795396 |
atatgttagagtttgacaaaccaagtaacacacttgagtggcttttcactaaatc |
46795342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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