View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13851_low_10 (Length: 451)

Name: NF13851_low_10
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13851_low_10
NF13851_low_10
[»] chr5 (4 HSPs)
chr5 (198-437)||(1354152-1354391)
chr5 (7-134)||(1354454-1354576)
chr5 (198-276)||(19692787-19692865)
chr5 (198-246)||(5356293-5356341)
[»] scaffold0321 (1 HSPs)
scaffold0321 (314-380)||(17975-18041)
[»] chr6 (6 HSPs)
chr6 (314-380)||(12877779-12877845)
chr6 (314-380)||(15951547-15951613)
chr6 (314-380)||(3836111-3836178)
chr6 (326-380)||(16712899-16712951)
chr6 (314-380)||(14579004-14579070)
chr6 (314-380)||(20759271-20759334)
[»] chr4 (10 HSPs)
chr4 (314-380)||(580605-580671)
chr4 (314-380)||(31768253-31768319)
chr4 (314-378)||(26947472-26947536)
chr4 (314-380)||(6664391-6664458)
chr4 (314-379)||(6685783-6685846)
chr4 (198-252)||(49144826-49144880)
chr4 (198-244)||(49446590-49446636)
chr4 (314-371)||(13250971-13251028)
chr4 (313-380)||(6682327-6682392)
chr4 (327-378)||(35341659-35341708)
[»] chr2 (9 HSPs)
chr2 (314-380)||(80468-80534)
chr2 (198-273)||(8773643-8773716)
chr2 (314-380)||(13438159-13438225)
chr2 (198-273)||(8789919-8789992)
chr2 (198-276)||(44941046-44941124)
chr2 (198-276)||(34546233-34546311)
chr2 (314-380)||(10941826-10941891)
chr2 (198-279)||(18052980-18053060)
chr2 (198-243)||(42945012-42945057)
[»] chr3 (4 HSPs)
chr3 (314-379)||(6240628-6240693)
chr3 (197-249)||(27968260-27968312)
chr3 (198-247)||(52340115-52340164)
chr3 (198-276)||(34758992-34759069)
[»] chr8 (4 HSPs)
chr8 (315-380)||(24681398-24681463)
chr8 (330-380)||(38059154-38059204)
chr8 (198-274)||(31206373-31206449)
chr8 (325-379)||(29275401-29275456)
[»] scaffold0019 (1 HSPs)
scaffold0019 (314-378)||(174076-174140)
[»] chr7 (8 HSPs)
chr7 (198-244)||(46684553-46684599)
chr7 (314-378)||(37006266-37006330)
chr7 (198-277)||(8170094-8170173)
chr7 (197-244)||(15034795-15034842)
chr7 (314-380)||(38414120-38414184)
chr7 (332-378)||(22245038-22245084)
chr7 (199-251)||(43670475-43670527)
chr7 (200-272)||(47305496-47305567)
[»] chr1 (8 HSPs)
chr1 (329-380)||(8753663-8753714)
chr1 (314-380)||(27793806-27793873)
chr1 (314-380)||(48715045-48715111)
chr1 (201-244)||(50974571-50974614)
chr1 (198-276)||(40377105-40377182)
chr1 (326-378)||(524985-525037)
chr1 (199-275)||(44719245-44719320)
chr1 (193-237)||(45584597-45584641)
[»] scaffold0933 (1 HSPs)
scaffold0933 (314-378)||(1556-1620)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 198 - 437
Target Start/End: Complemental strand, 1354391 - 1354152
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttcccaaacttaattggtgtggtttt 297  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||    
T  1354391 ttgattatatatattttcatgataatttaccttttaaaggccttaaccaatgccctcggagcaccggttaacatttcccaaacttaattgatgtggtttt 1354292  T
Q  298 ataattacactagtaataaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatagnnnnnnntctaataaaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||       ||||||||||    
T  1354291 ataattacactagtaataaattttaaatatatttcaaaagttttaaataccttgtgtctcatatttttaattgagaaatatagaaaaaaatctaataaaa 1354192  T
Q  398 aattattaccatattttttattttgacaatagattattac 437  Q
     |||||||||||||||||||||||||||||||||||||||    
T  1354191 gattattaccatattttttattttgacaatagattattac 1354152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 1354576 - 1354454
Alignment:
Q  7 attctgcaaatgtagcaatcatacctagataggaatactatactctgcatagcaaatcacaagaggatataaatacccaattttcgtaaactcaatatgt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  1354576 attctgcaaatgtagcaatcatacctagataggaatactatactctgcatagcaaatcacaagaggatataaatacccaattttcgtaaactcaa----- 1354482  T
Q  107 cctattaacaagtgcctccgagacactc 134  Q
    | | ||||||||||||||||||||||||    
T  1354481 cttgttaacaagtgcctccgagacactc 1354454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 19692787 - 19692865
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttccc 276  Q
    ||||||||| ||| ||| ||||||| ||||  ||||||||||||||||| ||||  |||  ||||||||||||||||||    
T  19692787 ttgattacacataatttgatgataagttacaatttaaaggccttaaccagtgcccccgggacactggttaacatttccc 19692865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 5356341 - 5356293
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaacca 246  Q
    ||||||||| ||||||||||||||| ||||| ||||||| |||||||||    
T  5356341 ttgattacacatattttcatgataagttaccatttaaagaccttaacca 5356293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 17975 - 18041
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  17975 taaattttaagtatatttcaaaagtttcaaatattttgtgtcccatatttttaattgagaaatatag 18041  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 12877845 - 12877779
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| | |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  12877845 taaattttgagtatatttcaaaagtttcaaatattttgtgtcccatatttttaattgagaaatatag 12877779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 15951547 - 15951613
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| | ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  15951547 taaattttgagtatatttcaaaagttttaaataatttgtgtcccatatttttaattgagaaatatag 15951613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 3836178 - 3836111
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatctt-gtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| || ||||||||||||||| |||||| || ||||  ||||||||||||||||||||||||    
T  3836178 taaattttgaacatatttcaaaagtttcaaatatttttgtgttccatatttttaattgagaaatatag 3836111  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 16712951 - 16712899
Alignment:
Q  326 atatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||||||||||||||||  ||||||| |||| ||||||| |||||||||||    
T  16712951 atatttcaaaagttttaaata--ttgtgtcccataattttaatagagaaatatag 16712899  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 14579004 - 14579070
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| | |||||||||||||||| |||||| || | |   |||||||||||||||||||||||    
T  14579004 taaattttgattatatttcaaaagtttcaaatattttatattctatatttttaattgagaaatatag 14579070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 20759334 - 20759271
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| | |||||||||||||||| ||||   ||||||| |||| ||||| |||||||||||||    
T  20759334 taaattttgagtatatttcaaaagtttcaaat---ttgtgtcccataattttatttgagaaatatag 20759271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 580671 - 580605
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| | ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  580671 taaattttgagtatatttcaaaagttttaaatattttgtgtcccatattttcaattgagaaatatag 580605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 31768319 - 31768253
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| | |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  31768319 taaattttgagtatatttcaaaagtttcaaatattttgtgtcccatatttttaattgagaaatatag 31768253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 26947472 - 26947536
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatat 378  Q
    |||||||| | |||||||||||||| | |||||| ||||||| |||||||| |||||||||||||    
T  26947472 taaattttgattatatttcaaaagtctaaaatattttgtgtcccatattttcaattgagaaatat 26947536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 6664458 - 6664391
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcata-tttttaattgagaaatatag 380  Q
    |||||||| | | |||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||    
T  6664458 taaattttgagtgtatttcaaaagtttcaaatattttgtgtcccatattttttaattgagaaatatag 6664391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 6685783 - 6685846
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatata 379  Q
    |||||||| | |||||||||||||||| |||||| ||||  | |||||||||||||||||||||||    
T  6685783 taaattttgagtatatttcaaaagtttcaaatattttgt--cccatatttttaattgagaaatata 6685846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 49144826 - 49144880
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgcct 252  Q
    ||||||||||||||||| |||| || ||||| ||||||| | |||||||||||||    
T  49144826 ttgattacatatatttttatgaaaaattaccatttaaagactttaaccaatgcct 49144880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 49446636 - 49446590
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaac 244  Q
    ||||||||| ||||||||||||||| ||||  |||||||||||||||    
T  49446636 ttgattacacatattttcatgataagttactatttaaaggccttaac 49446590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 13251028 - 13250971
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattga 371  Q
    |||||||| | |||||||||||||||| |||||| || |||| |||||||| ||||||    
T  13251028 taaattttgattatatttcaaaagtttcaaatattttatgtcccatattttcaattga 13250971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 6682327 - 6682392
Alignment:
Q  313 ataaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    ||||||||| | ||||||| |||||||| |||||| ||||  |  |||||||||||||||||||||||    
T  6682327 ataaattttgagtatattttaaaagtttcaaatattttgt--cctatatttttaattgagaaatatag 6682392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 378
Target Start/End: Original strand, 35341659 - 35341708
Alignment:
Q  327 tatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatat 378  Q
    ||||||||||||||||||||  | ||||| ||||||||||| ||||||||||    
T  35341659 tatttcaaaagttttaaata--tagtgtcccatatttttaaatgagaaatat 35341708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 80468 - 80534
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| | |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  80468 taaattttgagtatatttcaaaagtttcaaatattttgtgtcccatatttttaattgagaaatatag 80534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 8773716 - 8773643
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacattt 273  Q
    ||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||| ||||| |||||||||||||||    
T  8773716 ttgattacatatattttcatgttaagttaccctttaaagaccttaaccaatgcc-tcgga-cactggttaacattt 8773643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 13438225 - 13438159
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| ||||||||||||||||||| ||||| ||||||| || ||||| |||||||||||||||    
T  13438225 taaattttgaatatatttcaaaagttttgaatattttgtgtcccacattttcaattgagaaatatag 13438159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 8789919 - 8789992
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacattt 273  Q
    ||||||||| ||||||||||| ||| ||||| ||||||| ||||||||| |||| ||||| |||||||||||||||    
T  8789919 ttgattacacatattttcatgttaagttaccctttaaagaccttaaccagtgcc-tcgga-cactggttaacattt 8789992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 44941124 - 44941046
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcgga-gcactggttaacatttccc 276  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||||| | || ||||||| | | |||||||||||||||    
T  44941124 ttgattacatatattttcctgataaattaccatttaaaggccttaactagtg-cttcggaggtattggttaacatttccc 44941046  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 34546311 - 34546233
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttccc 276  Q
    ||||||||| | ||||||||||||| ||| | ||||| || ||||||||||||| |||  ||||| |||||||||||||    
T  34546311 ttgattacacacattttcatgataagttatcatttaatggtcttaaccaatgccctcgaggcactagttaacatttccc 34546233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 10941891 - 10941826
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| ||| |||||||||||||  || ||| ||||||||||||||||  ||||||||||||||    
T  10941891 taaattttgaatgtatttcaaaagttc-aattattttgtgtctcatattttctattgagaaatatag 10941826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 18053060 - 18052980
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttcccaaa 279  Q
    ||||||| | ||| ||||||||||| |||||||| |||||||||||| ||||||   ||  ||||||||||||||| |||||    
T  18053060 ttgattatacatactttcatgataaattaccttt-aaaggccttaactaatgccccggggacactggttaacattttccaaa 18052980  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 42945057 - 42945012
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaa 243  Q
    ||||||||| ||||||| ||||||||||||  ||||||||||||||    
T  42945057 ttgattacacatatttttatgataatttactatttaaaggccttaa 42945012  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 6240693 - 6240628
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatata 379  Q
    |||||||| | ||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  6240693 taaattttgagtatatttcaaaagttttaaatattttgtgtcctatatttttaattgagaaatata 6240628  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 27968260 - 27968312
Alignment:
Q  197 tttgattacatatattttcatgataatttaccttttaaaggccttaaccaatg 249  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  27968260 tttgattacacatattttcatgataagttaccatttaaaggccttaaccaatg 27968312  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 52340164 - 52340115
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaa 247  Q
    ||||||||| ||||||| ||||||| ||||| ||||||||||||||||||    
T  52340164 ttgattacacatatttttatgataagttaccatttaaaggccttaaccaa 52340115  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 34758992 - 34759069
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttccc 276  Q
    |||||||||||||||| |||||||| ||||  ||||||| ||||||| | ||||  ||| |||| ||||||||||||||    
T  34758992 ttgattacatatatttccatgataagttactatttaaagcccttaactagtgcc-ccggtgcaccggttaacatttccc 34759069  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 24681463 - 24681398
Alignment:
Q  315 aaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    ||||||| |||||||||||||||||  |||||| |||||||| | |||||||||||||||||||||    
T  24681463 aaattttgaatatatttcaaaagttacaaatattttgtgtcttagatttttaattgagaaatatag 24681398  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 38059154 - 38059204
Alignment:
Q  330 ttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||||||||||||| ||||||| |||  |||||||||||||||||||    
T  38059154 ttcaaaagttttaaatattttgtgtcacattattttaattgagaaatatag 38059204  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 31206373 - 31206449
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttc 274  Q
    ||||||||| ||||||| ||||||| ||||  ||||||||||||||| ||||||   ||||||||  ||||||||||    
T  31206373 ttgattacacatatttttatgataaattactatttaaaggccttaactaatgccccgggagcactaattaacatttc 31206449  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 379
Target Start/End: Original strand, 29275401 - 29275456
Alignment:
Q  325 tatatttcaaaagttttaaatatcttgt-gtctcatatttttaattgagaaatata 379  Q
    |||||||||||||||| ||| || || | |||||||||||||||||||||||||||    
T  29275401 tatatttcaaaagtttcaaacatttttttgtctcatatttttaattgagaaatata 29275456  T

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Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 174076 - 174140
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatat 378  Q
    |||||||| | |||||||||||||||| |||||| |||||||||||| ||| |||||||||||||    
T  174076 taaattttgattatatttcaaaagtttcaaatattttgtgtctcatactttcaattgagaaatat 174140  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 46684599 - 46684553
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaac 244  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  46684599 ttgattacatatattttcatgataaattaccatttaaaggccttaac 46684553  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 37006266 - 37006330
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatat 378  Q
    |||||||| | ||||||| |||||||| |||||| ||||||| ||||||||||||| ||||||||    
T  37006266 taaattttgagtatattttaaaagtttcaaatattttgtgtcccatatttttaatttagaaatat 37006330  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 8170094 - 8170173
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttccca 277  Q
    ||||||| | |||| |||||||||| |||| |||||||| ||||||| | ||||   || ||||||||||||||||||||    
T  8170094 ttgattatacatatgttcatgataagttactttttaaagaccttaactagtgccccaggggcactggttaacatttccca 8170173  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 15034842 - 15034795
Alignment:
Q  197 tttgattacatatattttcatgataatttaccttttaaaggccttaac 244  Q
    ||||||||||  ||||||||| |||| |||||||||||||||||||||    
T  15034842 tttgattacacgtattttcataataagttaccttttaaaggccttaac 15034795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 38414120 - 38414184
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| | ||||||||||||||||||||||  || ||||  |||||||||||| ||||||||||    
T  38414120 taaattttgagtatatttcaaaagttttaaata--ttatgtcctatatttttaatttagaaatatag 38414184  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 22245084 - 22245038
Alignment:
Q  332 caaaagttttaaatatcttgtgtctcatatttttaattgagaaatat 378  Q
    |||||||||||||||| ||| |||||||||||||  |||||||||||    
T  22245084 caaaagttttaaatatattgcgtctcatatttttggttgagaaatat 22245038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 43670475 - 43670527
Alignment:
Q  199 tgattacatatattttcatgataatttaccttttaaaggccttaaccaatgcc 251  Q
    ||||||||||| |||| ||||||| ||||| ||||||| |||| |||||||||    
T  43670475 tgattacatatgtttttatgataaattaccatttaaagaccttcaccaatgcc 43670527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 47305567 - 47305496
Alignment:
Q  200 gattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatt 272  Q
    ||||||| ||||||||||||||| ||||| ||||||  ||||||| | ||||  |||||||| ||||||||||    
T  47305567 gattacacatattttcatgataagttaccatttaaacaccttaactagtgcc-ccggagcaccggttaacatt 47305496  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 8753714 - 8753663
Alignment:
Q  329 tttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||||||| |||||| ||||||| ||||| ||||||||||||||||||    
T  8753714 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatag 8753663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 27793873 - 27793806
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcata-tttttaattgagaaatatag 380  Q
    |||||||| | ||||||||||||||||||||||| ||||||  |||| ||||||||| ||||||||||    
T  27793873 taaattttgagtatatttcaaaagttttaaatattttgtgttccatattttttaattaagaaatatag 27793806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 48715111 - 48715045
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatatag 380  Q
    |||||||| | |||||||||||||||| |||||  ||||||  |||||||| |||||||||||||||    
T  48715111 taaattttgagtatatttcaaaagtttcaaataatttgtgttccatattttcaattgagaaatatag 48715045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 50974614 - 50974571
Alignment:
Q  201 attacatatattttcatgataatttaccttttaaaggccttaac 244  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||    
T  50974614 attacatatattttcatgataaattaccatttaaaggtcttaac 50974571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 40377105 - 40377182
Alignment:
Q  198 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttccc 276  Q
    ||||||||| |  |||||||||||| ||||| ||||||||||||||| | |||| | || ||||| |||||||||||||    
T  40377105 ttgattacacaacttttcatgataaattaccatttaaaggccttaactagtgccct-ggggcactcgttaacatttccc 40377182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 525037 - 524985
Alignment:
Q  326 atatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatat 378  Q
    |||||||||||||||||||  |  |||||| ||||||||||||||| ||||||    
T  525037 atatttcaaaagttttaaacgtagtgtgtcccatatttttaattgaaaaatat 524985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 44719245 - 44719320
Alignment:
Q  199 tgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttcc 275  Q
    |||||||| | ||||||||||||| ||||| |||||||  |||||| | |||| |||| ||| ||||||||||||||    
T  44719245 tgattacacacattttcatgataaattaccatttaaagctcttaactagtgcc-tcggggcagtggttaacatttcc 44719320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 45584597 - 45584641
Alignment:
Q  193 atgttttgattacatatattttcatgataatttaccttttaaagg 237  Q
    |||| ||||||||| ||||||||||||||| |||| |||||||||    
T  45584597 atgtattgattacacatattttcatgataagttactttttaaagg 45584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 1620 - 1556
Alignment:
Q  314 taaattttaaatatatttcaaaagttttaaatatcttgtgtctcatatttttaattgagaaatat 378  Q
    |||||||| | ||||||| |||||||| |||||| ||||||| |||||| | |||||||||||||    
T  1620 taaattttgattatattttaaaagtttcaaatattttgtgtcccatattatcaattgagaaatat 1556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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