View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_11 (Length: 340)
Name: NF13851_low_11
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 43994883 - 43994578
Alignment:
| Q |
18 |
attccaaaaaacatgcctaaccattactgaatgactcaaaattaaaaggtgtattagtgaatgttacaagttacaaccaatccaaaacaggttaacacac |
117 |
Q |
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| T |
43994883 |
attccaaaaaacatgcctaaccattactgaatgactcaa--ttaaaaggtgtattagtgaatgttacaagttacaaccaatccaaaacaggttaacacac |
43994786 |
T |
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| Q |
118 |
aaaacactaactctaccaataccaaccttgcagtactcctaaatacattaaggcagcagcatatcattactcctttacataaaaatctttaaataagcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43994785 |
aaaacactaactctaccaataccaaccttgcagtactcctaaatacattaaggcagcagcatatcattactcctttacataaaaatctttaaataagcca |
43994686 |
T |
|
| Q |
218 |
ccaccaaaacacacaaacttgctatatataagctaaagagaacagacacggacacgacacaaacactcacagtcgacaccaataaaattttgagacaatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43994685 |
ccaccaaaacacacaaacttgctatatataagctaaagagaacagacacggacacgacacaaacactcacagtcgacaccaataacattttgagacaatg |
43994586 |
T |
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| Q |
318 |
acataatt |
325 |
Q |
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|||||||| |
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| T |
43994585 |
acataatt |
43994578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 63 - 321
Target Start/End: Complemental strand, 18224065 - 18223824
Alignment:
| Q |
63 |
aaggtgtattagtgaatgttacaagttacaaccaatccaaaacaggttaacacacaaaacactaactctaccaataccaaccttgcagtactcctaaata |
162 |
Q |
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| T |
18224065 |
aaggtctattagtgaatgctacaagttacaaccaatccaaaacaggtaaacatacaaaacaataacactaccaa-accaaccatttagtactcccaaata |
18223967 |
T |
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| Q |
163 |
cattaaggcagcagcatatcattactcctttacataaaaatctttaaataagccaccaccaaaacacacaaacttgctatatataagctaaagagaacag |
262 |
Q |
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||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||| || |||||||||| |||| || |||| |
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| T |
18223966 |
cattaaggcagcagcatataattactcc---------------ttaaataaaccaccgccaaaacacacaatctatctatatataaagtaaaaagtacag |
18223882 |
T |
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| Q |
263 |
acacggacacgacacaaacactcacagtcgacaccaataaaattttgagacaatgacat |
321 |
Q |
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|||||||||||||||||||| |||||||| ||||| || ||||||| |||||||||||| |
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| T |
18223881 |
acacggacacgacacaaacattcacagtcaacacctat-aaatttttagacaatgacat |
18223824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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