View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13851_low_12 (Length: 337)
Name: NF13851_low_12
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 2882347 - 2882655
Alignment:
| Q |
1 |
caagtgtaaagttcataaggtaatttcaagaaggaaaagcaagttccaaacagatgagatttaagtgcagaatgacacctgtagtcatatgtgaaaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2882347 |
caagtgtaaagttcataaggtaatgtcaagaaggaaaaggtagttccaaacagatgagatttaagtgcagaatgacacctgtagtcatatgtgaaaggag |
2882446 |
T |
|
| Q |
101 |
tacgacgcacatgataataattccaaactgtctccaacaaaagtatctaaatatgagagaacaccatctgtgattcaatggatttcagtaaaaagttgca |
200 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2882447 |
tgcgaggcacatgataataattccaaactgtctccaacaaaagtatctaaatatgagagaacaccatctgtgattcaatggatttcagtaaaaagttgca |
2882546 |
T |
|
| Q |
201 |
catggtttaatcaggtttctctctaactttaaatagaagggtaaaaaagataagttcacatgattaaatgaaaataaactggcattcatatgaagaaaga |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2882547 |
catggtttaatcaggtttctc--------taaatagaagggtaaaaaataaatgttcacatgattaaatgaaaataaactggcattcatatgaagaaaga |
2882638 |
T |
|
| Q |
301 |
gtattaaaaggaaggttc |
318 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
2882639 |
gtact-aaaggaaggttc |
2882655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University