View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_13 (Length: 336)
Name: NF13851_low_13
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 29932083 - 29931760
Alignment:
| Q |
1 |
tgatgggtttgattaatctgaaatataactgctgcaggaacggtacggatgccatgcaatgatgctggaaacaattgcagccgtcccgccaatggtggga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29932083 |
tgatgggtttgattaatctgaaatataactgctgcaggaacggtacggatgccatgcaatgatgctggaaacaattgcagccgtcccgccaatggtggga |
29931984 |
T |
|
| Q |
101 |
gggatgcttttacacttgaagtctctaagaaaatttcaacacactggtggttggatcaaagcattacttgaagaagcagagaatgagaggatgcatttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29931983 |
gggatgcttttacacttgaagtctctaagaaaatttcaacacactggtggttggatcaaagcattacttgaagaagcagagaatgagaggatgcatttga |
29931884 |
T |
|
| Q |
201 |
tgacaatggtagagcttgtaaaaccaagttggcatgaaaggcttttggttattactgcacaaggagttttcttcaatgcattctttgttttttacatcct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29931883 |
tgacaatggtagagcttgtaaaaccaagttggcatgaaaggcttttggttattactgcacaaggagttttcttcaatgcattctttgttttttacatact |
29931784 |
T |
|
| Q |
301 |
ctcaccaaaaactgcacacaggtt |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
29931783 |
ctcaccaaaaactgcacacaggtt |
29931760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 29934799 - 29934484
Alignment:
| Q |
9 |
ttgattaatctgaaatataactgctgcaggaacggtacggatgccatgcaatgatgctggaaacaattgcagccgtcccgccaatggtgggagggatgct |
108 |
Q |
| |
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||||||||| |||| ||||| | |||||||||| || || ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||| |
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| T |
29934799 |
ttgattaatttgaattataattattgcaggaacgatatggttgccatgcaatgatgctagaaacaatagcagcggtccctggaatggtgggagggatgct |
29934700 |
T |
|
| Q |
109 |
tttacacttgaagtctctaagaaaatttcaacacactggtggttggatcaaagcattacttgaagaagcagagaatgagaggatgcatttgatgacaatg |
208 |
Q |
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||||||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29934699 |
tttacacttaaaatctctaagaaaatttcaacatgccggtggttggatcaaagcattacttgaagaagcagagaatgaaaggatgcatttgatgacaatg |
29934600 |
T |
|
| Q |
209 |
gtagagcttgtaaaaccaagttggcatgaaaggcttttggttattactgcacaaggagttttcttcaatgcattctttgttttttacatcctctcaccaa |
308 |
Q |
| |
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|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||||||||| |
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| T |
29934599 |
gttgagcttgtgaaaccaagttggcatgagaggcttttggttattactgcacaaggtgttttctttaatggattctttgtgttttacatcctctcaccaa |
29934500 |
T |
|
| Q |
309 |
aaactgcacacaggtt |
324 |
Q |
| |
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||| ||||| ||||| |
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|
| T |
29934499 |
aaatagcacataggtt |
29934484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 297
Target Start/End: Original strand, 37469372 - 37469619
Alignment:
| Q |
50 |
tgccatgcaatgatgctggaaacaattgcagccgtcccgccaatggtgggagggatgcttttacacttgaagtctctaagaaaatttcaacacactggtg |
149 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||| ||||| |||||| ||||||||||| || ||| | ||||| || |||||||||| || | ||||| |
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| T |
37469372 |
tgccgtgcaatgatgcttgaaacagttgcagctgtccctggaatggttggagggatgctgttgcacctcaagtcactccgaaaatttcagcatagtggtg |
37469471 |
T |
|
| Q |
150 |
gttggatcaaagcattacttgaagaagcagagaatgagaggatgcatttgatgacaatggtagagcttgtaaaaccaagttggcatgaaaggcttttggt |
249 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||| ||||| || || | ||| | || || || |||| |
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| T |
37469472 |
gttgggtcaaagcattgcttgaagaagcagagaatgagaggatgcacctaatgactatggtagaacttgtgaagccgaaatggtacgagagatttctggt |
37469571 |
T |
|
| Q |
250 |
tattactgcacaaggagttttcttcaatgcattctttgttttttacat |
297 |
Q |
| |
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| || ||| ||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
37469572 |
tcttgctgtacagggagttttcttcaatgcattctttgtactttacat |
37469619 |
T |
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