View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_14 (Length: 302)
Name: NF13851_low_14
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 43206866 - 43206566
Alignment:
| Q |
1 |
agagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtata----caaaataggaagcctatgctaactattgtgtactaa |
96 |
Q |
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| T |
43206866 |
agagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtatatacacaaaataggaagcctatgctaactattgtgtactaa |
43206767 |
T |
|
| Q |
97 |
ctagtacaatagcacttgaactcaagtagcttgctaagcaagttacatagtccacaatagaaatcaaagagaaactcctatatattgtaataaactgtat |
196 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43206766 |
ctagtagaatagcacttgaactcaagtagcttgctaagcaagttacatagtctataatagaaatcaaagagaaactcctatatattgtaataaactgtat |
43206667 |
T |
|
| Q |
197 |
attgcatctcttaaagcttggtttcttgttttcatctttcttctattttattcggttgcctatttgagtttgtaatattagtcacaagaagaataatcta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43206666 |
attgcatctcttaaagcttggtttcttgttttcatctttcttctattttattcggttgcctatttgagtttgtaatattagtcacaagaagaataatcta |
43206567 |
T |
|
| Q |
297 |
c |
297 |
Q |
| |
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| |
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| T |
43206566 |
c |
43206566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 17206193 - 17206091
Alignment:
| Q |
184 |
taataaactgtatattgcatctcttaaagcttggtttcttgttttcatctttcttctattttattcggttgcctatttgagtttgtaa-tattagtcaca |
282 |
Q |
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| T |
17206193 |
taataaattgtatactacatttcttaaagcttggttttttgtttt-atcttttatctattttattcagttgcctatttgtgtgtgtaattcttagtcaca |
17206095 |
T |
|
| Q |
283 |
agaa |
286 |
Q |
| |
|
|||| |
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| T |
17206094 |
agaa |
17206091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 18832229 - 18832153
Alignment:
| Q |
112 |
ttgaactcaagtagcttgctaagcaagttacatagtccacaatagaaatcaaagagaaactcctatatattgtaata |
188 |
Q |
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|||||||| ||| |||||||| ||||||||||||||| | | || ||| |||||||||||||| || |||||||||| |
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| T |
18832229 |
ttgaactctagtggcttgctatgcaagttacatagtctaaactaaaaaacaaagagaaactccgatttattgtaata |
18832153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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