View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_15 (Length: 257)
Name: NF13851_low_15
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 42592370 - 42592137
Alignment:
| Q |
16 |
ggttctggtttatctatcacatgtttcagtgcgctgaaaccaattgtgaaggccggcagaagtgaatatcacaatattcaaaagttcattcaacttcaac |
115 |
Q |
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| T |
42592370 |
ggttctggtttatctatcacatgtttcagtgcgctgaaaccaattgtgaaggctggcagaagtgaatatcacaatattcaaaagttcattcaacttcaac |
42592271 |
T |
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| Q |
116 |
tgacagttggtatatcagggctactcataaccttgattacaacaatattcacaggaaattctcctctaacagaaatccaattgatttgggtgaatgcgct |
215 |
Q |
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| T |
42592270 |
tgacagttggtatatcagggctactcataaccttgattacaacaatattcacaggaaattctcctctaacagaaatccaattgatttgggtgaatgcgct |
42592171 |
T |
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| Q |
216 |
aatgtgtcttctgggtggcctaatgatgatgatg |
249 |
Q |
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| T |
42592170 |
aatgtgtcttctgggtggcctaatgatggtgatg |
42592137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 4092419 - 4092639
Alignment:
| Q |
29 |
ctatcacatgtttcagtgcgctgaaaccaattgtgaaggccggcagaagtgaatatcacaatattcaaaagttcattcaacttcaactgacagttggtat |
128 |
Q |
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|||| |||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| | || |
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| T |
4092419 |
ctatgacatgtttcagtgcattggaaccaattgtgaaggccggcagacgtaaatatcacaatattcaaaagttcattcaacttcagctgacagttagcat |
4092518 |
T |
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| Q |
129 |
atcagggctactcataaccttgattacaacaatattcacaggaaattctcctctaacagaaatccaattgatttgggtgaatgcgctaatgtgtcttctg |
228 |
Q |
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| T |
4092519 |
atcagggttactcataaccttgattacaacaattttcacaggaaattctcctctaacagcaatccaaatgatttggataaatgtgctaatgtgccttcta |
4092618 |
T |
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| Q |
229 |
ggtggcctaatgatgatgatg |
249 |
Q |
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||||||||||||||| ||||| |
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| T |
4092619 |
ggtggcctaatgatggtgatg |
4092639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 15713241 - 15713110
Alignment:
| Q |
108 |
acttcaactgacagttggtatatcagggctactcataaccttgattacaacaatattcacaggaaat-tctcctctaacagaaatccaattgatttgggt |
206 |
Q |
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|||||||||||||||| | |||||| || ||||||||| ||||| | |||||| | || | |||| || ||| || ||| |||||||||||||| ||| |
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| T |
15713241 |
acttcaactgacagttagcatatcaaggttactcataatcttgactcaaacaatgtccatatgaaaaatcccct-tagcagcaatccaattgatttaggt |
15713143 |
T |
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| Q |
207 |
gaatgcgctaatgtgtcttctgggtggcctaat |
239 |
Q |
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||| |||||||||| |||||||||||||||| |
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| T |
15713142 |
gaacatgctaatgtgttttctgggtggcctaat |
15713110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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