View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_18 (Length: 244)
Name: NF13851_low_18
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 43206907 - 43207110
Alignment:
| Q |
1 |
ttaaagtattaacaaatgaaactataagtaattaacttgcatgcaccgttcattctaaataaactaactaaaactaaagagcagtgcagtaaaaaatctg |
100 |
Q |
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| T |
43206907 |
ttaaagtattaacaaatgaaactataagtaattaacttgcatgcaccgttcattctaaataaactaactaaaactaaagagcagtgcagtaaaaaatctg |
43207006 |
T |
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| Q |
101 |
aaaactatgttatgggtttgggttttttcattttctgccatatttgaagcaccacatgatcttgcaattacagatttgagatttagtgttcttttaaatt |
200 |
Q |
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| T |
43207007 |
aaaactatgttatgggtttgggttttttcattttctgccatatttgaagcaccacatgatcttgcaattacagatttgagatttagtgttcttttaaatt |
43207106 |
T |
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| Q |
201 |
agga |
204 |
Q |
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|||| |
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| T |
43207107 |
agga |
43207110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 43186351 - 43186484
Alignment:
| Q |
65 |
taactaaaactaaagagcagtgcagtaaaaaatctgaaaactatgttatgggtttgggttttttcattttctgccatatttgaagcaccacatgatcttg |
164 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||| | || || ||||||||||| |||||| ||||| |||||||| | | || |
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| T |
43186351 |
taactaaaactaaagaacagtgcagtcaaaaatctgaaaactatgtt---gtttatgggtttttcattttttgccatgtttgaggcaccacaggtttgtg |
43186447 |
T |
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| Q |
165 |
caattacagatttgagatttagtgttcttttaaatta |
201 |
Q |
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| T |
43186448 |
aaattacagatttagaatttattgttcttataaatta |
43186484 |
T |
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