View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_3 (Length: 596)
Name: NF13851_low_3
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 1911481 - 1912081
Alignment:
| Q |
1 |
atttatttatatatttattttatcatcatttctcatgcaacatatgggttccattattacatataaccggtgcattgcaccggtatataactagtattaa |
100 |
Q |
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| T |
1911481 |
atttatttatatatttattttatcatcatttctcatgcaacatatgggttccattattacatataaccggtgcattgcaccggtatataactagtattaa |
1911580 |
T |
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| Q |
101 |
tataagaaagtaatcaaactata--------------------tatatattgcatgcattccacgtactaattaaacacacactgtgtaaccttgtagag |
180 |
Q |
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| T |
1911581 |
tataagaaagtaatcaaactatatatatatatatatatatatatatatattgcatgcattccacgtactaattaaacacacactgtgtaaccttgtagag |
1911680 |
T |
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| Q |
181 |
tacaaaagtcaaaggaagatgaacaagtgaaagtgtgtttaaggactggtggtggaaggtggtggggtgaggaatgggaaaatggttgaaaatttgggga |
280 |
Q |
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| T |
1911681 |
tacaaaagtcaaaggaagatgaacaagtgaaagtgtgtttaaggactggtggtggaaggtggtggggtgaggaatgggaaaatggttgaaaatttgggga |
1911780 |
T |
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| Q |
281 |
tggagggaatgtttgggaatggaggacagtctggcttaggcagtggtggaaatgaaaatgaaggcaatggtggaaagcctgggaaatttgttaaagcttg |
380 |
Q |
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| T |
1911781 |
tggagggaatgtttgggaatggaggacaatctggcttaggcagtggtggaaatgaaaatgaaggcaatggtggaaagcctgggaaatttgttaaagcttg |
1911880 |
T |
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| Q |
381 |
ttcagtagtacttgcttgcaaaagatttctagctgctaggctcaagctcatgtttgagaagcttaaagcaaaaaagaaaattatgatgaaggatttcttt |
480 |
Q |
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| T |
1911881 |
ttcagtagtacttgcttgcaaaagatttctagctgctaggctcaagctcatgtttgagaagcttaaagcaaaaaagaaaattatgatgaaggatttcttt |
1911980 |
T |
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| Q |
481 |
gaggccatggttaagaatgaagaggaatgttgcaaaatatgcaaatgggagatatggtttgaaattgtatgtgaggctaaaggggaatgtttggtaaata |
580 |
Q |
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| T |
1911981 |
gaggccatggttaagaatgaagaggaatgttgcaaaatatgcaaatgggagatatggtttgaaattgtatgtgaggctaaaggggaatgtttggtaaata |
1912080 |
T |
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| Q |
581 |
t |
581 |
Q |
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| T |
1912081 |
t |
1912081 |
T |
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