View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_5 (Length: 559)
Name: NF13851_low_5
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Original strand, 20688709 - 20689257
Alignment:
| Q |
17 |
atacttgatgaaaatcccgacaacggtgaaatccagagtggatttgaagacagcggctttgggaaatggtctactagttggtcgcagcaattcattgtgc |
116 |
Q |
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| T |
20688709 |
atacttgatgaaaatcccgacaacggtgaaatccagagtggatttgaagacagcggctttgggaaatggtctactagttggtcgcagcaattcattgtgc |
20688808 |
T |
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| Q |
117 |
tgttaaaaagagacctgaaagagagaaaacatgaaccattctctgtcctgcgaatttctaagatcgttgttattgcccttcttacaggactactttggta |
216 |
Q |
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| T |
20688809 |
tgttaaaaagagacctgaaagagagaaaacatgaaccattctccgtcctgcgaatttctaagatcgttgtgattgcccttcttacaggactactttggta |
20688908 |
T |
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| Q |
217 |
taagtctagtgtttcgcacttgcaggatcaggtaataagattttcaattc--------------atgaaaataagttgtgttcctaagataccagattta |
302 |
Q |
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| T |
20688909 |
taagtctagtgtttcgcacttgcaggatcaggtaataagattttcaattcatgaaaaaggaaaaatgaaaataagttgtgttcctaagatatcagattta |
20689008 |
T |
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| Q |
303 |
gttcaattgtgtagaatttcgcttataaaatattagcaaatatacatgattcatgaatggcaaaggatg----------ataactcaattcttacgtgcg |
392 |
Q |
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| T |
20689009 |
gttcaattgtgtagaatttggcttataaaatattagcaaacatacatgattcatgaatggcaaaggatgatagttgaccataactcaattcttacgtgcg |
20689108 |
T |
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| Q |
393 |
tgtagattggccttctattcttcattaatagcttctgggctgtggtacctttctacaaagcaatattcactttccctcaagaggcaactatgctggaaaa |
492 |
Q |
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| T |
20689109 |
tgtagattggccttctattcttcattaatagcttctgggctgtggtacctttctacaaagcaatattcactttccctcaagaggcaactatgctggaaaa |
20689208 |
T |
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| Q |
493 |
agaaagatcttccggaatgtatagactctcatcatacttcatgtcaagg |
541 |
Q |
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| T |
20689209 |
agaaagatcttccggaatgtatagactctcatcatacttcatgtcaagg |
20689257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 540
Target Start/End: Original strand, 33720405 - 33720495
Alignment:
| Q |
450 |
aagcaatattcactttccctcaagaggcaactatgctggaaaaagaaagatcttccggaatgtatagactctcatcatacttcatgtcaag |
540 |
Q |
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| T |
33720405 |
aagcaatcttcaccttccctcaagaactaatgatgctagaaaaagaaagatcctcaggaatgtacagactctccgcatatttcatttcaag |
33720495 |
T |
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