View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_6 (Length: 550)
Name: NF13851_low_6
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 16945342 - 16945665
Alignment:
| Q |
11 |
agcataggcaaatatttgtgggattaaaccaaagacaaaaagtgatgctgctgatgcaatttttggtgattctcctagaaatattaaaattggttcggag |
110 |
Q |
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| T |
16945342 |
agcataggcaaatatttgtgggattaaaccaaagacaaaaagggatgctgctgatgcaatttttggtgattctcctagaaatattaaaattggttcggag |
16945441 |
T |
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| Q |
111 |
aatatgtatattattgttaaaattaaaccggctattgtaagaagcactgttgatctttgcaaatatatgcctaacatttcatannnnnnngctccaaatg |
210 |
Q |
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| T |
16945442 |
aatatgtatattattgttaaaattaaaccggctattgtgagaagcactgttgatctttgcaaatatatgcctaacatttcatatttttttgctccaaatg |
16945541 |
T |
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| Q |
211 |
cttgtccacatagtgtctcaacagcactccccatgcccaactgttcatcataaacactaccaattattcnnnnnnnnncacattactaatacaagggaat |
310 |
Q |
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| T |
16945542 |
cttgtccacatagtgtctcaacagcactccccatgcccaactgttcatcataaacatcaccaattattcaaaaaa----aaaatattaatacaagggaat |
16945637 |
T |
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| Q |
311 |
tggaaaatataccaattttaaattgata |
338 |
Q |
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| T |
16945638 |
tgggaaatataccaattttaaatagata |
16945665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 507
Target Start/End: Original strand, 16945686 - 16945805
Alignment:
| Q |
390 |
atagacactcctagccaacccacaagatttttcttaacactaaaaaa--taaaattataattaaaattaggatgaattcaaatatgtctattactttctt |
487 |
Q |
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| T |
16945686 |
atagacactattagccaacccacaagttttgtcttagcactaaaaaaaatagaattttaagcaaaattaggctggaataaaatctatctattactttctt |
16945785 |
T |
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| Q |
488 |
gttacttaagttaactacat |
507 |
Q |
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| T |
16945786 |
gtttcttaacttaactacat |
16945805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 37264502 - 37264260
Alignment:
| Q |
12 |
gcataggcaaatatttgtgggattaaaccaaagacaaaaagtgatgctgctgatgcaatttttggtgattctcctagaaatattaaaattggttcggaga |
111 |
Q |
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| T |
37264502 |
gcataagcaaatatttgtgggataagtccatacacaaaaagtgctgctgcagaagctattcttggtgattgtccaatgaatactaggattggttcactta |
37264403 |
T |
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| Q |
112 |
atatgtatattattgttaaaattaaaccggctattgtaagaagcactgttgatctttgcaaatatatgcctaacatttcatannnnnnngctccaaatgc |
211 |
Q |
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| T |
37264402 |
atacgtaaataattgtgaggaaaaaaccggttattgttagaagaattgttgatctttgtaaatatgttcctagcatgccatatttttctgctccatatgc |
37264303 |
T |
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| Q |
212 |
ttgtccacatagtgtctcaacagcactccccatgcccaactgt |
254 |
Q |
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| T |
37264302 |
ttgtccacatagtgtctcaactgcacttcccatacccaactgt |
37264260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 8004867 - 8004962
Alignment:
| Q |
158 |
tgttgatctttgcaaatatatgcctaacatttcatannnnnnngctccaaatgcttgtccacatagtgtctcaacagcactccccatgcccaactg |
253 |
Q |
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| T |
8004867 |
tgttgctctttgcatgtatattcctagcatttcatatttgtttgcaccatatgcttgtccacataatgtctccactgcacttcccatgcccaactg |
8004962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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