View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_7 (Length: 521)
Name: NF13851_low_7
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 53930581 - 53931021
Alignment:
| Q |
18 |
caaaggttattattattgatctttccctcttcttgcttatgtagttatcaatccctaacataaaatgtggctggagaacaagtgaattagaacctatatg |
117 |
Q |
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| T |
53930581 |
caaaggttactattattgatctttccctcttcttgcttatgttgttatcaattcctaacagagaatgtggctggaggacaagtgaattagcacctatatg |
53930680 |
T |
|
| Q |
118 |
cttaaatccatgtgcagtttgtttcgaaaggaaatgtatggtcgttgtagaaggtataacaccctttgaatttacactcgatgctgatctagatgctttt |
217 |
Q |
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|||| ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||| ||||||||||| || ||||| |||||| |||| |
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| T |
53930681 |
cttagatccatgtgcagtttgtttggaaagaaaatgtatggtcgctgtagaaggtataacaatcttttaatttacactcaatactgatatagatggtttt |
53930780 |
T |
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| Q |
218 |
acatggaaagatgatctggacttttaagatgcttaaacnnnnnnngtgcaacaattgcaatgtcaaggaagcttggtctcattcccnnnnnnntacattc |
317 |
Q |
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| T |
53930781 |
acatggaaaaatgatctggacttttaagatgcttaaactttttatgtgcaacaattgcaatgtcaaggaagcttggtctcattacc-agaaaatacattc |
53930879 |
T |
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| Q |
318 |
aaagtagatattctcaaaaatctaaatatt-------caatatctagtgatttcattttgactgatatatttatttacatatattaagtaattggtaagg |
410 |
Q |
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| T |
53930880 |
aaagtagatattctcaaaaatctaaatattctatttacaatatctagtcatttcattttgactgatatatttatttacatatattaagtaattggtcagg |
53930979 |
T |
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| Q |
411 |
cttggatatgttttctacaaatggtaggattctttcaaataa |
452 |
Q |
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| T |
53930980 |
cttggatatgttttctacaaatggtatgatcctgtcaaataa |
53931021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 53931149 - 53931198
Alignment:
| Q |
458 |
catagagaaacattttttgcaggtgtttctataaggagttattgctcggt |
507 |
Q |
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| T |
53931149 |
catagagaaacgtattttgcaagtgtttctatatggagttattgcacggt |
53931198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 7204416 - 7204254
Alignment:
| Q |
18 |
caaaggttattattattgatctttccctcttcttgcttatgtagttatcaatccctaacataaaatgtggctggagaacaagtgaattagaacctatatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||| ||||| | ||||||||||| ||||||||| |
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| T |
7204416 |
caaaggttattattattgatctttccctcttcttgcttatgttgttatcaatccataacagagaatgtggttggaggaaaagtgaattagcacctatatg |
7204317 |
T |
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| Q |
118 |
cttaaatccatgtgcagtttgtttcgaaaggaaatgtatggtcgttgtagaaggtataacacc |
180 |
Q |
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| T |
7204316 |
cttatatccatgtgcagtttgtttggaaaggaaatgtatggtcgctgtagaaggtagaacacc |
7204254 |
T |
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