View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13851_low_9 (Length: 459)
Name: NF13851_low_9
Description: NF13851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13851_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 30532332 - 30532568
Alignment:
| Q |
16 |
atccttaaaatgttcacaactgttgcagcttcaacaccgccatgtttttcatcttctacaagattctatgttgacaaaagaatctcaaagccattaaact |
115 |
Q |
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| T |
30532332 |
atccttaaaatgttcacaactgttgcagcttcaacactgccatgtttttcatcttttacaagattctatattgacaaaagaatctcaaagccattaaact |
30532431 |
T |
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| Q |
116 |
atgttcactctttctcactattcacacccccctttctgcatttctcctctaaaagacacccccatttctttccacaagctg------cttcatcttcatc |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30532432 |
atgttcactctttctcactattcacacccccctctctgcatttcgcctctaaaagacacccccatttctttccacaagctgcttcatcttcatcttcatc |
30532531 |
T |
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| Q |
210 |
ttcatctgctggtaagtaagattatctagtcattgcc |
246 |
Q |
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| T |
30532532 |
ttcatctgctggtaagtaagattatctagtcattgcc |
30532568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 298 - 394
Target Start/End: Original strand, 30532607 - 30532707
Alignment:
| Q |
298 |
aatgcagaatggagaacaaact----ttaatgtcaatgatgcatttgtgaagattgttaattatatttatatgacactgcatgttagattgatatacaat |
393 |
Q |
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|||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30532607 |
aatgcagaatggagaataaactaactttaatgaaaatgatgcatttgtgaagattgttaattatatttatatcacactgcatgttagattgatatacaat |
30532706 |
T |
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| Q |
394 |
g |
394 |
Q |
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| |
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| T |
30532707 |
g |
30532707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 444
Target Start/End: Original strand, 30532725 - 30532758
Alignment:
| Q |
411 |
aatatttgtaattagaagatgttaaagtaaaagc |
444 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30532725 |
aatatttgtaattagaagatgttaaagtaaaagc |
30532758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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