View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13852_high_5 (Length: 309)
Name: NF13852_high_5
Description: NF13852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13852_high_5 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (7 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 15240681 - 15240383
Alignment:
| Q |
11 |
taattctatactattgaagcatttggtaaggtggtggcaacctccttctcatgcatgtgttgacgtagtccaataatcaagactagtagataataaatga |
110 |
Q |
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| T |
15240681 |
taattctatactattgaagcatttggtaaggtggtggcaacctccttctcatgcatgtgttgacgtagtccaataatcaagactagtagataataaatga |
15240582 |
T |
|
| Q |
111 |
accataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacacttccat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15240581 |
accataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacacttccat |
15240482 |
T |
|
| Q |
211 |
gagggtatcaatccttgttgtatcaaatttaagtttaacccaaaatgctaaagaatatagtagaaagctagcaatagagactaacattgtctttggatg |
309 |
Q |
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| T |
15240481 |
gagggtatcaatccttgttgtatcaaatttaagtttaacccaaaatgctaaagaatatagtagaaagctagcaatagagactaacattgtctttggatg |
15240383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 118 - 308
Target Start/End: Complemental strand, 15246905 - 15246718
Alignment:
| Q |
118 |
tgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacacttccatgagggta |
217 |
Q |
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|||| ||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||| |
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| T |
15246905 |
tgtgcatatgataatgtatccagataatccccaattctttgggaagaacatcaacaccaaagaaattattgaaagcgaaccaaacacttccttaagggta |
15246806 |
T |
|
| Q |
218 |
tcaatccttgttgtatcaaatttaagtttaacccaaaatgctaaagaatatagtagaaagctagcaatagagactaacattgtctttggat |
308 |
Q |
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| T |
15246805 |
tcaagccttctgg---caaatttaagtttaaccctaaaagccaaacaatatagtagaaagctagcaatagagactaacattgtctttggat |
15246718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 86 - 309
Target Start/End: Original strand, 10693576 - 10693796
Alignment:
| Q |
86 |
atcaagactagtagataataaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaatta |
185 |
Q |
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|||| ||| |||| || |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| || |
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| T |
10693576 |
atcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaacta |
10693675 |
T |
|
| Q |
186 |
ttgaaagggaaccaaacacttccatgagggtatcaatccttgttgtatcaaatttaagtttaacccaaaatgctaaagaatatagtagaaagctagcaat |
285 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| ||| |||| |||| || || |||| |||||| || || ||||||| |||||||||||||| |
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| T |
10693676 |
ttgaaagggaaccaaacacttccatgaaggtatcaaccctagttg---caaacttgagcttaatccaaaaggcaaaggaatatattagaaagctagcaac |
10693772 |
T |
|
| Q |
286 |
agagactaacattgtctttggatg |
309 |
Q |
| |
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||||| || ||||||||||||||| |
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| T |
10693773 |
agagagtatcattgtctttggatg |
10693796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 105 - 309
Target Start/End: Original strand, 10698182 - 10698383
Alignment:
| Q |
105 |
aaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacac |
204 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| ||| ||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10698182 |
aaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaattattgaaagggaaccaaacac |
10698281 |
T |
|
| Q |
205 |
ttccatgagggtatcaatccttgttgtatcaaatttaagtttaacccaaaatgctaaagaatatagtagaaagctagcaatagagactaacattgtcttt |
304 |
Q |
| |
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||||||||||||||||| ||||||||| ||| ||||| |||| |||||| || ||| ||||||| ||||| ||||||||||| |||||| || ||||| |
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| T |
10698282 |
ttccatgagggtatcaacccttgttgt---aaacttaagcttaatccaaaaggccaaacaatataggagaaaactagcaatagacactaacgttatcttt |
10698378 |
T |
|
| Q |
305 |
ggatg |
309 |
Q |
| |
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||||| |
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| T |
10698379 |
ggatg |
10698383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 105 - 309
Target Start/End: Original strand, 10657472 - 10657673
Alignment:
| Q |
105 |
aaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacac |
204 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||| ||||||||| | |
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| T |
10657472 |
aaatgaaccataatgtgtaaatggtaatgtatccaaataatccccatttgtttgggatgaacatcaacaccaaagaaattattgaaagtgaaccaaacgc |
10657571 |
T |
|
| Q |
205 |
ttccatgagggtatcaatccttgttgtatcaaatttaagtttaacccaaaatgctaaagaatatagtagaaagctagcaatagagactaacattgtcttt |
304 |
Q |
| |
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||||||||||||||||| | || || |||| ||||| |||| |||||| || || ||||||||||||||||||| | ||||| || |||||||||| |
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| T |
10657572 |
ttccatgagggtatcaa---gtcttatagcaaacttaagcttaatccaaaaggcaaagcaatatagtagaaagctagctacagagagtagcattgtcttt |
10657668 |
T |
|
| Q |
305 |
ggatg |
309 |
Q |
| |
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||||| |
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| T |
10657669 |
ggatg |
10657673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 105 - 309
Target Start/End: Original strand, 10707391 - 10707592
Alignment:
| Q |
105 |
aaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacac |
204 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||| | | ||||||| | ||| ||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
10707391 |
aaatgaaccatattgtatatatgataaagtatccaagtgtttcccaattttctggaaagaacatcaacaccaaagaaactattgaaagggaaccaaacac |
10707490 |
T |
|
| Q |
205 |
ttccatgagggtatcaatccttgttgtatcaaatttaagtttaacccaaaatgctaaagaatatagtagaaagctagcaatagagactaacattgtcttt |
304 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||| |||| |||||| || ||| ||||||||||||||||||||| ||||| || |||||| ||| |
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| T |
10707491 |
ttccatgagggtatcaacccttgttg---caaacataagcttaatccaaaaggcaaaacaatatagtagaaagctagcaacagagattatcattgttttt |
10707587 |
T |
|
| Q |
305 |
ggatg |
309 |
Q |
| |
|
||||| |
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|
| T |
10707588 |
ggatg |
10707592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 309
Target Start/End: Original strand, 10690228 - 10690450
Alignment:
| Q |
84 |
taatcaagactagtagataataaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaat |
183 |
Q |
| |
|
|||||| || ||||| || | |||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||| |||||||| ||||| ||||| |
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| T |
10690228 |
taatcatgattagtacatgaaaaatgaaccatattgtgtatatgataatatatccaaataatccccaattttctgggagcaacatcaacaccaatgaaat |
10690327 |
T |
|
| Q |
184 |
tattgaaagggaaccaaacacttccatgagggtatcaatccttgttgtatcaaatttaagtttaacccaaaatgctaaagaatatagtagaaagctagca |
283 |
Q |
| |
|
|| |||||| |||||||||||||||| | |||||||| || ||||| |||| ||||| |||| | || || || |||||||||||||||||||| |
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| T |
10690328 |
taatgaaagtgaaccaaacacttccaacaaggtatcaaccc---ttgtagcaaacttaagcttaatcatgaaggccaagcaatatagtagaaagctagca |
10690424 |
T |
|
| Q |
284 |
atagagactaacattgtctttggatg |
309 |
Q |
| |
|
||||| || ||| ||||||||||||| |
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| T |
10690425 |
atagataccaacgttgtctttggatg |
10690450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 10633883 - 10633980
Alignment:
| Q |
106 |
aatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaaca |
203 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| || ||||||| | | || |||||||||| ||||||||||||||||| || |||||||||| |
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| T |
10633883 |
aatgaaccatgttgtgtatatgacaatgtatccaactactccccaacttttaggaaagaacatcatcaccaaagaaattattgagagcgaaccaaaca |
10633980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 10634053 - 10634098
Alignment:
| Q |
264 |
aatatagtagaaagctagcaatagagactaacattgtctttggatg |
309 |
Q |
| |
|
||||||||| ||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
10634053 |
aatatagtaaaaaactagccatagagacaaacattgtctttggatg |
10634098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 33777571 - 33777362
Alignment:
| Q |
100 |
ataataaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaacca |
199 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| | ||| ||||||||||| ||| | |||||| || |||||||||| ||||||||| |||||| |
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|
| T |
33777571 |
ataacaaatgaaccatgctgtgtatatgataatgtatgaacatactccccaattgtttggaaggaacattaacaccaaagaaactattgaaagtgaacca |
33777472 |
T |
|
| Q |
200 |
aacacttccatgagggtatcaatccttgttgtatcaaatttaagtttaacccaaaatgctaaagaatatagtagaaagctagcaatagagactaacattg |
299 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| ||| |||| |||| |||||| | ||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
33777471 |
aacacttctatgagtgtatcaattcttgttgtggtaaacttaatcttaatccaaaagaccaaacaatatagtagaaagctagcaatagagacaaacattg |
33777372 |
T |
|
| Q |
300 |
tctttggatg |
309 |
Q |
| |
|
|||||||||| |
|
|
| T |
33777371 |
tctttggatg |
33777362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 33774936 - 33774722
Alignment:
| Q |
100 |
ataataaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatc----aaaaccaaagaaattattgaaaggga |
195 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||| || |||||||||| ||||||||| || |
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| T |
33774936 |
ataacaaatgaaccatatcgtgtatatgataatgtatcctgataatgtccaattgtttgggaggaacatcgatcaacaccaaagaaactattgaaagtga |
33774837 |
T |
|
| Q |
196 |
accaaacacttccatgagggtatcaatccttgttgtatcaaatttaagtttaacccaaaatgctaaagaatatagtag-aaagctagcaatagagactaa |
294 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| || ||| |||| |||| ||| || | || |||||||||| |||||||||||||| ||| || |
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| T |
33774836 |
gccaaacacttccatgagtgtatcaattcttgtcgtggtaaacttaatattaatccagaagaccaagcaatatagtagaaaagctagcaatagtgacaaa |
33774737 |
T |
|
| Q |
295 |
cattgtctttggatg |
309 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33774736 |
cattgtctttggatg |
33774722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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