View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13852_low_1 (Length: 516)
Name: NF13852_low_1
Description: NF13852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13852_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 174 - 500
Target Start/End: Original strand, 43691892 - 43692232
Alignment:
| Q |
174 |
taccatcagagaagattgtcctgttgctgtcgacctggttaagtacaaacaacttaaatttcacatgtctgctccatcctttagacatgttagcagtttc |
273 |
Q |
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| T |
43691892 |
taccatcagagaagattgtcctgttgctgtcgacctggttaagtacaaacaacttaaatttcacatgtctgctccatcctttagacatgttagcagtttc |
43691991 |
T |
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| Q |
274 |
cacaacactc--------------gtcgcctacattgtcaccccattgataagaagtatcttcctaaagcaaaagcaaaatcagatcactaaattctaac |
359 |
Q |
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| T |
43691992 |
cacaacactcaaaaaaattgataagtcgcctacattgtcaccccattgataagaagtatcttcctaaagcaaaagcaaaatcagatcactaaattctaac |
43692091 |
T |
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| Q |
360 |
atgtgagaatttattcatacaaatagcataccatggatagccacctagcacaaaaggctcagagtaagtccccccgttccagcgagagaaattctcaaca |
459 |
Q |
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| T |
43692092 |
atgtgagaatttattcatacaaatagcataccatggatagccacctagcacaaaaggctcagagtaagtccccccgttccagcgagagaaattctcaaca |
43692191 |
T |
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| Q |
460 |
ttccatgtaaatgtctcaaacttctcaacaatagattgttt |
500 |
Q |
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| T |
43692192 |
ttccatgtaaatgtctcaaacttctcaacaatagattgttt |
43692232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 43691738 - 43691822
Alignment:
| Q |
20 |
tgggaaaaagcatgaatcaagagtcaattaaactactctaaaggaaaaatcttctaacttatatatttattttcttgatttgtgt |
104 |
Q |
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| T |
43691738 |
tgggaaaaagcatgaatcaagagtcaattaaactactctaaaggaaaaatcttctaacttatatatttattttcttgatttgtgt |
43691822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 43693774 - 43693839
Alignment:
| Q |
435 |
gttccagcgagagaaattctcaacattccatgtaaatgtctcaaacttctcaacaatagattgttt |
500 |
Q |
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| T |
43693774 |
gttcaagcaagagaagttctcaaccttccacgtgaatgtttcaaacttctcaacactagagtgttt |
43693839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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