View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13852_low_2 (Length: 443)

Name: NF13852_low_2
Description: NF13852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13852_low_2
NF13852_low_2
[»] scaffold0651 (2 HSPs)
scaffold0651 (82-428)||(236-583)
scaffold0651 (82-311)||(8155-8384)
[»] chr4 (2 HSPs)
chr4 (82-428)||(31330324-31330671)
chr4 (82-311)||(31315313-31315542)


Alignment Details
Target: scaffold0651 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 82 - 428
Target Start/End: Complemental strand, 583 - 236
Alignment:
Q  82 cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcag 181  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  583 cctcgtcagggattggatatttagaagcagagatgttgaagaaagattgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcag 484  T
Q  182 tgaagggaacataacttcacatatgcttgtgagtgactccatctcggccacagaaaacccatgtttgtatttgcgattctctctcacaccactcaacaat 281  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  483 tgaagggaacattacttcacatatgcttgtgagtgactccatctcagccacagaaaacccatgtttgtatttgcgattctctctcataccactcaacaat 384  T
Q  282 ggatgacactctcttctcatctttctttctttctgtgttgtgatcactgatgtgaaaagaatgtggagtttttctttttgaaggagaatgaggggagagt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  383 ggatgacactctcttctcatctttctttctttctgtgttgtgatcactgatgtgaaaagaatgtggagtttttccttttgaaggagaacgaggggagagt 284  T
Q  382 tatatatgaaaagaattaatat-aagtctataataagcacatgaatat 428  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  283 tatatatgaaaataattaatataaagtctataataagcacatgaatat 236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 82 - 311
Target Start/End: Original strand, 8155 - 8384
Alignment:
Q  82 cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcag 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  8155 cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggcaa 8254  T
Q  182 tgaagggaacataacttcacatatgcttgtgagtgactccatctcggccacagaaaacccatgtttgtatttgcgattctctctcacaccactcaacaat 281  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  8255 tgaaggcaacacaacttcacatatgcttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaat 8354  T
Q  282 ggatgacactctcttctcatctttctttct 311  Q
    ||||||||||||||||||||||||||||||    
T  8355 ggatgacactctcttctcatctttctttct 8384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 82 - 428
Target Start/End: Complemental strand, 31330671 - 31330324
Alignment:
Q  82 cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcag 181  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330671 cctcgtcagggattggatatttagaagcagagatgttgaagaaagattgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcag 31330572  T
Q  182 tgaagggaacataacttcacatatgcttgtgagtgactccatctcggccacagaaaacccatgtttgtatttgcgattctctctcacaccactcaacaat 281  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31330571 tgaagggaacattacttcacatatgcttgtgagtgactccatctcagccacagaaaacccatgtttgtatttgcgattctctctcataccactcaacaat 31330472  T
Q  282 ggatgacactctcttctcatctttctttctttctgtgttgtgatcactgatgtgaaaagaatgtggagtttttctttttgaaggagaatgaggggagagt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  31330471 ggatgacactctcttctcatctttctttctttctgtgttgtgatcactgatgtgaaaagaatgtggagtttttccttttgaaggagaacgaggggagagt 31330372  T
Q  382 tatatatgaaaagaattaatat-aagtctataataagcacatgaatat 428  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  31330371 tatatatgaaaataattaatataaagtctataataagcacatgaatat 31330324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 82 - 311
Target Start/End: Complemental strand, 31315542 - 31315313
Alignment:
Q  82 cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcag 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  31315542 cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggcaa 31315443  T
Q  182 tgaagggaacataacttcacatatgcttgtgagtgactccatctcggccacagaaaacccatgtttgtatttgcgattctctctcacaccactcaacaat 281  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  31315442 tgaaggcaacacaacttcacatatgcttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaat 31315343  T
Q  282 ggatgacactctcttctcatctttctttct 311  Q
    ||||||||||||||||||||||||||||||    
T  31315342 ggatgacactctcttctcatctttctttct 31315313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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