View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13852_low_3 (Length: 374)
Name: NF13852_low_3
Description: NF13852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13852_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 15240406 - 15240062
Alignment:
| Q |
12 |
agagactaacattgtctttggatggagttgaaaggctgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15240406 |
agagactaacattgtctttggatggagttgaaagactgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccaca |
15240307 |
T |
|
| Q |
112 |
agaccatgaagagaattggtttctattcccatgatgttgttatgtacatgaacattactaacattaacattgatggtcacttgacatctattaaaattgg |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15240306 |
agaccatgaagagaattggttgctattcccatgatgttgttatgtacatgaacattactaacattaacattgatgatcacttgacatctattaaaattgg |
15240207 |
T |
|
| Q |
212 |
agctttgtcttaccacatccaccattgaattgaaattacaagnnnnnnnnnnnnnnnnnnnnctcttatgtggagtcagaattgtagaatatggaacctc |
311 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15240206 |
atctttgtcttaccacatccaccattgaattgaaattacaag-tttttttttttttttttttctcctatgtggagtcagaattgtagaatatggaacctc |
15240108 |
T |
|
| Q |
312 |
tatcttcttatatagtgcatatatttatttttgagaaacgtgaaat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15240107 |
tatcttcttatatagtgcatatatttatttttgagaaacgtgaaat |
15240062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 15246740 - 15246621
Alignment:
| Q |
12 |
agagactaacattgtctttggatggagttgaaaggctgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccaca |
111 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||||||||||||||| | ||| | | |||||| | || ||| |||||| ||||||||| |
|
|
| T |
15246740 |
agagactaacattgtctttggattg--ttgaaaggttgtgggattatctggatagctaattcg--ggaaacctctgagtacacaaaaaaataaggccaca |
15246645 |
T |
|
| Q |
112 |
agaccatgaagagaattggtttct |
135 |
Q |
| |
|
| |||||||||| |||||||||| |
|
|
| T |
15246644 |
gggccatgaagaggattggtttct |
15246621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 33777385 - 33777248
Alignment:
| Q |
12 |
agagactaacattgtctttggatggagttgaaaggctgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccaca |
111 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| || ||||||||||||||||||| ||||| || ||||| || || ||| | ||||||||||||| | |
|
|
| T |
33777385 |
agagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgagtacaaagaaaatgaaggccata |
33777286 |
T |
|
| Q |
112 |
agaccatgaagagaattggtttctattcccatgatgtt |
149 |
Q |
| |
|
|| ||||||| || ||||||||||| ||||||||||| |
|
|
| T |
33777285 |
aggccatgaaaaggattggtttctacacccatgatgtt |
33777248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 33774738 - 33774610
Alignment:
| Q |
19 |
aacattgtctttggatggagttgaaaggctgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccacaagaccat |
118 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||||||| ||||| || ||||| || || | | ||||||||||||| ||| |||| |
|
|
| T |
33774738 |
aacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgagtcc--agaaaatgaaggccataaggccat |
33774641 |
T |
|
| Q |
119 |
gaagagaattggtttctattcccatgatgtt |
149 |
Q |
| |
|
||| | ||||||||||| |||||||||||| |
|
|
| T |
33774640 |
gaaaatgattggtttctactcccatgatgtt |
33774610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 10693772 - 10693896
Alignment:
| Q |
11 |
cagagactaacattgtctttggatggagttgaaaggctgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccac |
110 |
Q |
| |
|
|||||| || ||||||||||||||||| |||||| || |||| ||||||||||||| ||||||||| ||||| | || ||| | ||| ||||||||| |
|
|
| T |
10693772 |
cagagagtatcattgtctttggatggatttgaaatgcactgggtttatctggataactgatttggaggaaaccaaggagtacaaagaaagtgaaggccat |
10693871 |
T |
|
| Q |
111 |
aagaccatgaagagaattggtttct |
135 |
Q |
| |
|
||||| |||||||| |||||||||| |
|
|
| T |
10693872 |
aagacaatgaagaggattggtttct |
10693896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 10657649 - 10657787
Alignment:
| Q |
11 |
cagagactaacattgtctttggatggagttgaaaggctgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccac |
110 |
Q |
| |
|
|||||| || |||||||||||||||| |||||| || |||||||||| |||||||| ||||| || ||||| || || ||| | |||| ||||| || |
|
|
| T |
10657649 |
cagagagtagcattgtctttggatgggcttgaaatgcagtgggattatttggataactaatttgaaggaaaccaatgaggacaaagaaaaggaaggtcat |
10657748 |
T |
|
| Q |
111 |
aagaccatgaagagaattggtttctattcccatgatgtt |
149 |
Q |
| |
|
||| ||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
10657749 |
aaggccatggagaggattggtttctactcccatgatgtt |
10657787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 10707568 - 10707708
Alignment:
| Q |
11 |
cagagactaacattgtctttggatggagttgaaaggctgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccac |
110 |
Q |
| |
|
|||||| || |||||| |||||||||| |||||| || |||||||||||||||||| |||||||| ||| | | || ||| | ||||||||||||| |
|
|
| T |
10707568 |
cagagattatcattgtttttggatggatttgaaatgcagtgggattatctggataagtaatttggaggaaagcaaggagtacaaagaaaatgaaggccat |
10707667 |
T |
|
| Q |
111 |
aagaccatgaagagaattggtttctattcccatgatgttgt |
151 |
Q |
| |
|
||| | ||| |||| |||||||||| |||||||||||||| |
|
|
| T |
10707668 |
aaggctatgtagagggttggtttctactcccatgatgttgt |
10707708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 10634075 - 10634204
Alignment:
| Q |
12 |
agagactaacattgtctttggatggagttgaaaggctgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccaca |
111 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||| | || ||||| |||||||| | |||||||| ||||| || || ||| ||||||||||||||| | |
|
|
| T |
10634075 |
agagacaaacattgtctttggatggacttcaaacgaggttggattttctggatatcgaatttggaggaaaccaatgagtacaaaaaaaatgaaggccata |
10634174 |
T |
|
| Q |
112 |
agaccatgaagagaattggtttctattccc |
141 |
Q |
| |
|
|| |||||| || |||| |||||| |||| |
|
|
| T |
10634175 |
aggacatgaaaaggattgttttctactccc |
10634204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 10698364 - 10698513
Alignment:
| Q |
16 |
actaacattgtctttggatggagttgaaaggctgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccacaagac |
115 |
Q |
| |
|
|||||| || |||||||||||| |||||| | || ||||| ||||| || | |||||||| ||||| | || ||| | ||||| ||||| ||||| | |
|
|
| T |
10698364 |
actaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaaccaaggagtacaaagaaaataaaggctacaaggc |
10698463 |
T |
|
| Q |
116 |
catgaagagaattggtttctattcccatgatgttgttatgtacatgaaca |
165 |
Q |
| |
|
|||| ||| ||| ||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
10698464 |
catgttgaggattagtttccattcccatgatgttattatatacatgaaca |
10698513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 10690438 - 10690564
Alignment:
| Q |
23 |
ttgtctttggatggagttgaaaggctgtgggattatctggataacagatttggagaaaacctataagcacataaaaaatgaaggccacaagaccatgaag |
122 |
Q |
| |
|
||||||||||||||| |||||| | || ||||| |||||||| | | |||||| ||||| | || ||| | ||||||||||| ||||| ||||| | |
|
|
| T |
10690438 |
ttgtctttggatggacttgaaaaggggtaggattttctggatatctaacttggaggaaaccaaggagtacaaagaaaatgaaggctacaaggccatgttg |
10690537 |
T |
|
| Q |
123 |
agaattggtttctattcccatgatgtt |
149 |
Q |
| |
|
|| ||| ||||||| |||||||||||| |
|
|
| T |
10690538 |
aggattagtttctactcccatgatgtt |
10690564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University