View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13852_low_4 (Length: 353)
Name: NF13852_low_4
Description: NF13852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13852_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 1041941 - 1041641
Alignment:
| Q |
18 |
aaatttgctttcagttttgatctattttgctatgttattcatttctacctcaacgactctaaaactgacatgctattgcaaatttatctaagatccattg |
117 |
Q |
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| T |
1041941 |
aaatttgctttcagttttgatctattttgctatcttattcatttctacctcaacgactctaaaactgacatgctattgcaaaattatctaagatccattg |
1041842 |
T |
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| Q |
118 |
ggtcacccattactaagccatcttgagtcacactcttgatatagtgtgtgttgagagtttctaactggatgtgatgtgacttgaaatagtgtttataata |
217 |
Q |
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| T |
1041841 |
ggtcacccattactaagccatcttgagtcacactcttgatatagtgtgtgttgagagtttctaactggatgtgatgtgacttgaaatagtgtttata--- |
1041745 |
T |
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| Q |
218 |
atagacatttataataatagacatttctcagattaaaaattaattttgtgtgtttggcccaacccaacttttaagatggtaaacaacaacatcaattact |
317 |
Q |
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| T |
1041744 |
------------agtaatagacatttctcagatt-aaaattaattttgtgtgtttggcccaacccaacttttaagatggtaaacaacaacatcaattact |
1041658 |
T |
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| Q |
318 |
ttttggtcttaagtctt |
334 |
Q |
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||||||||||||||||| |
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| T |
1041657 |
ttttggtcttaagtctt |
1041641 |
T |
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