View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13852_low_6 (Length: 245)
Name: NF13852_low_6
Description: NF13852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13852_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 13228034 - 13227821
Alignment:
| Q |
16 |
ataccaaaaattcctcgttatttatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagata |
115 |
Q |
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| T |
13228034 |
ataccaaacattcctcgttatttatatttattcttaagcaagtcccaaaaagtccttagttgagccatcatttctatttcgtctttcgtttcgatagata |
13227935 |
T |
|
| Q |
116 |
tatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13227934 |
tatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagaccctgctcatg |
13227835 |
T |
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| Q |
216 |
gattaacgaaaatg |
229 |
Q |
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|||||||||||||| |
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| T |
13227834 |
gattaacgaaaatg |
13227821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 53883670 - 53883761
Alignment:
| Q |
132 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatg |
229 |
Q |
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| T |
53883670 |
ttctttttctattgattcttttccaattat------ggatggatccatacataggtctatgtgtgtgtatagatcctgctcattgattaatgaaaatg |
53883761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 47522820 - 47522608
Alignment:
| Q |
16 |
ataccaaaaattcctcgttatttatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagata |
115 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47522820 |
ataccaaacattcctggttatttatatttattcttaagcaagtccccaaaagtgtttagttgagccatcatttctatttcgtctttcgtttcgataaata |
47522721 |
T |
|
| Q |
116 |
tatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatg |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
47522720 |
tatcgattaattccgattctttttctatcgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtacatagatcctactcatg |
47522621 |
T |
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| Q |
216 |
gattaacgaaaat |
228 |
Q |
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||||||||||||| |
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| T |
47522620 |
gattaacgaaaat |
47522608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 42680336 - 42680153
Alignment:
| Q |
40 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattcttttt |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42680336 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctattttgtctttcgtttccatagatatatcgattaattccgattcttttt |
42680237 |
T |
|
| Q |
140 |
ctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatg |
229 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
42680236 |
ctattgattcttttccaa------ttatgtatggatccatacataggtctacgtgtgtatatagatcctactcatggattaacgaaaatg |
42680153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 35934647 - 35934768
Alignment:
| Q |
40 |
tatttattcttaagcaagtccccaaaagt-gcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattctttt |
138 |
Q |
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||||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
35934647 |
tatttattcttaagcaagtcctcaaaagttggttagttaagccatcaattctattt-gtctttcgtttcgatagatatatctattaattatgattatttt |
35934745 |
T |
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| Q |
139 |
tctattgattcttttccaattat |
161 |
Q |
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||||||||||||||||||||||| |
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| T |
35934746 |
tctattgattcttttccaattat |
35934768 |
T |
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