View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13852_low_7 (Length: 238)
Name: NF13852_low_7
Description: NF13852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13852_low_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 42730818 - 42730598
Alignment:
| Q |
18 |
ttaaaaatagaaacaaaggataaagaagacaaacaagtataatgtaaagggagaaatacatttacctaagatgctaaaataacttttaaggtgtttcctt |
117 |
Q |
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| T |
42730818 |
ttaaaaatagaaacaaaggataaagaagacaaacaagtataatgtaaagggagaaatacatttacctaatatgctaaaataacttttaaggtgtttcctt |
42730719 |
T |
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| Q |
118 |
aagtcaaccatgatatagaaaccaattgcgagaacaatataaagttcttgtcccctaatgtgccaactaagaatgtgcaaacaacacatgagactggttc |
217 |
Q |
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| T |
42730718 |
aagtcaaccatgatatagaaaccaattgcgagaacaatataaagttcttgtcccctaatgtgccaactaagaatgtgcaaacaacacatgagagtggttc |
42730619 |
T |
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| Q |
218 |
taaaggggtgctagacatcct |
238 |
Q |
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||||| ||||||||||||||| |
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| T |
42730618 |
taaagaggtgctagacatcct |
42730598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 14166957 - 14167001
Alignment:
| Q |
23 |
aatagaaacaaaggataaagaagacaaacaagtataatgtaaagg |
67 |
Q |
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|||||||||| |||| |||||||||||||| || ||||||||||| |
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| T |
14166957 |
aatagaaacagaggacaaagaagacaaacatgtgtaatgtaaagg |
14167001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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