View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13853_high_4 (Length: 260)
Name: NF13853_high_4
Description: NF13853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13853_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 47 - 248
Target Start/End: Complemental strand, 45936523 - 45936322
Alignment:
| Q |
47 |
aatgcatatgcttacttgaatgatgaaccatagtgaccaaataagagcactgagaattaagagaatagggcctagaagcacattattagattgggcagca |
146 |
Q |
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| T |
45936523 |
aatgcatatgcttacttgaatgatgaaccatagtgaccaaataagagcactgagaattaagagaatagggcctagaagcacattattagattgggcagca |
45936424 |
T |
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| Q |
147 |
gaggagttatcaccagctccttcaattctctcagcataactccaatgaatttttgattctggtataccaattacttgtccatggtaaaatgatagaatta |
246 |
Q |
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| T |
45936423 |
gaggagttatcaccagctccttcaattctctcagcataactccaatgaatttttgattctggtataccaattacttgtccatggtaaaatgatagaagta |
45936324 |
T |
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| Q |
247 |
tc |
248 |
Q |
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|| |
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| T |
45936323 |
tc |
45936322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 10561866 - 10561796
Alignment:
| Q |
54 |
atgcttacttgaatgatgaaccatagtgaccaaataagagcactgagaattaagagaatagggcctagaag |
124 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||| | |||||||||||| |
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| T |
10561866 |
atgcttacttgaatgataaaccatagtgaccaaacaagagcattaagaattaagagcacagggcctagaag |
10561796 |
T |
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