View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13853_low_1 (Length: 401)
Name: NF13853_low_1
Description: NF13853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13853_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 25 - 379
Target Start/End: Complemental strand, 28203054 - 28202699
Alignment:
| Q |
25 |
actaataataaaatcacga-cataatgacaatatttctacaagaagtaattttagttacgaaaatacatttactttttcaagcagatctggcgtgtttcc |
123 |
Q |
| |
|
||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28203054 |
actaaaaataaaatcacgaacataatgacagtatttctacaagaagtaattttagttatgaaaatacatttactttttcaagcagatctggcgtgtttcc |
28202955 |
T |
|
| Q |
124 |
attactaatggaaaccatatcttagaaaatacgattctatgaagtaatgagaaagacatgaacgatagtgaagatccttgaacgttgatcaagctactat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28202954 |
attactaatggaaaccatatcttagaaaatacaattctatgaagtaatgagaaagacatgaacgatagtgaagatccttgaacgttgatcaagctactat |
28202855 |
T |
|
| Q |
224 |
aaaattagtgcttataaaaataggctaccacctcatagcaacatttagtaagcagcttataaaataataataattaaggaagtaaaatcactgtttacac |
323 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28202854 |
aaaattagtgcttataaaaatatgctaccacctcatagcaacatttagtaagcagcttataaaataataataattaaggaagtaaaatcattgtttacac |
28202755 |
T |
|
| Q |
324 |
ctaaaattatataaattcttaactgaaaacggcacacactcgaattaagggtgagt |
379 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28202754 |
ctagaattatataaattcttaactgaaaacggcacacactcgaattaagggtgagt |
28202699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University