View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13853_low_3 (Length: 357)
Name: NF13853_low_3
Description: NF13853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13853_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 23170819 - 23170964
Alignment:
| Q |
11 |
aagaatattaaacaaattcttctatcttttttctatcttaattcttaagtttagcttgtaacgtacagcataattatactccggcatttttctatgtgct |
110 |
Q |
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| T |
23170819 |
aagaaaattaaacaaattcttctatcttttttctatcttaattcttaagttttggttgtaacgtacgacataattatactccggcatttttctatgtgct |
23170918 |
T |
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| Q |
111 |
atacttttcctcttcgaaatttctttggtcaaatcaaacgatataa |
156 |
Q |
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| T |
23170919 |
atacttttcctcttcgaaatttctttggtcaaatcaaacgatataa |
23170964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 23186700 - 23186816
Alignment:
| Q |
41 |
ttctatcttaattcttaagttta-gcttgtaacgtacagcataattatactccggcatttttctatgtgctatacttttcctcttcgaaatttctttggt |
139 |
Q |
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| T |
23186700 |
ttctatcttaactcttaagtttttgcatgtaatgtatgacataattatactccggcatttttctatgtgctatacttttcgtcttagaaatttctttggt |
23186799 |
T |
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| Q |
140 |
caaatcaaacgatataa |
156 |
Q |
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| T |
23186800 |
caaataaaacgatataa |
23186816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 23171105 - 23171177
Alignment:
| Q |
271 |
agaactcaattaaataattttaacaaagagtgtgcggatatgattttcttagagagattgttgattattattg |
343 |
Q |
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| T |
23171105 |
agaattcaattaaataattttaacaaggagtgtgcggatatgattttcttagagagattgttgattattattg |
23171177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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