View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13853_low_4 (Length: 266)
Name: NF13853_low_4
Description: NF13853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13853_low_4 |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 23135361 - 23135610
Alignment:
| Q |
3 |
gggtcattctcaaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaaatatttcaaacttgaacaaagtttctcaaagat |
102 |
Q |
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| T |
23135361 |
gggtcattctcaaagaagtaaatgatcattctagtactatttaatggaattatccattagaggcaaaatatttcaaacttgaacaaagtttctcaaaaac |
23135460 |
T |
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| Q |
103 |
atttt-atgcgttgacacctcttcaaacaatatatctttt-ttctcttctatttaagaacctaagcagtttgaagaactcatgagacttcatgtaatttt |
200 |
Q |
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| T |
23135461 |
atttttatgcgttgacacctcttcaaataatatatcttttattctcttctatttaagaacctaagcagtttgaagaactcatgaaacttcatgtaatttt |
23135560 |
T |
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| Q |
201 |
acaaatgacaaagttttgtcaaattatatagcgcacaaacacttaaaaaa |
250 |
Q |
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| T |
23135561 |
acaaatgacaaagttttgtcaaattatatagcgcacaaacacttaaaaaa |
23135610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 4796 - 4891
Alignment:
| Q |
6 |
tcattctcaaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaaatatttcaaacttgaacaaagtttctcaaaga |
101 |
Q |
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| T |
4796 |
tcattcccaaagaagcaaataatctctctagaactattcaacaaaattatccattagaggaaaaatatttcaaacctaatcaaagtttctcaaaga |
4891 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 25621833 - 25621745
Alignment:
| Q |
13 |
caaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaaatatttcaaacttgaacaaagtttctcaaaga |
101 |
Q |
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| T |
25621833 |
caaagaagcaaataatctctctagaactattcaacgaaattatccattagaggaaaaatatttcaaacctaatgaaagtttctcaaaga |
25621745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 25809205 - 25809117
Alignment:
| Q |
13 |
caaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaaatatttcaaacttgaacaaagtttctcaaaga |
101 |
Q |
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| T |
25809205 |
caaagaagcaaataatctctctagaactattcaacgaaattatccattagaggaaaaatatttcaaacctaatcaaagtttcccaaaga |
25809117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 33546228 - 33546129
Alignment:
| Q |
31 |
ctctagtactatttaatggaattatccattagaggcaaaatatttcaaacttgaacaaagtttctcaaagatattttatgcgttgacacctcttcaaaca |
130 |
Q |
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| T |
33546228 |
ctctattactattcaattgaattatccattagagacaaaa-ctttcaaacctgatcaaagcttctcaaggaagatttatgtgttgacacttcttcaaaca |
33546130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 24716053 - 24716288
Alignment:
| Q |
14 |
aaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaaatatttcaaact-tgaacaaagtttctcaaagatat-tttatgc |
111 |
Q |
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| T |
24716053 |
aaagaagtaaaagatccctctagtaatattcaacagaattatcc-ttaaaggcaaagtatt-caaacactgatcaaagcttcgcaaggaaaaatttatgt |
24716150 |
T |
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| Q |
112 |
gttgacacctcttcaaacaatatatctttt-ttctcttctatttaagaacctaagcagtttgaagaac--tcatgagacttcatgtaattttacaaatga |
208 |
Q |
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| T |
24716151 |
gttggcacctcttcaaacaattactcttttattctctcctatttaaggacctgagcagttagaagaacaaaaatga-acatcatgtaattttacaagttc |
24716249 |
T |
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| Q |
209 |
caaagttttgtcaaattatatagcgcacaaacacttaaa |
247 |
Q |
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| T |
24716250 |
caaaaccctgtaaaattatgtagcgcacaaacacttaaa |
24716288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 1185865 - 1185922
Alignment:
| Q |
6 |
tcattctcaaagaagtaaatgatcgctctagtactatttaatggaattatccattaga |
63 |
Q |
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| T |
1185865 |
tcattctcaaagaagaaaatgaaacctctaatactattcaatgaaattatccattaga |
1185922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 17088769 - 17088809
Alignment:
| Q |
87 |
aaagtttctcaaagatattttatgcgttgacacctcttcaa |
127 |
Q |
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| T |
17088769 |
aaagtttctcaaagattattaatgcgttgacacctcttcaa |
17088809 |
T |
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