View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13854_high_13 (Length: 237)

Name: NF13854_high_13
Description: NF13854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13854_high_13
NF13854_high_13
[»] chr3 (7 HSPs)
chr3 (2-237)||(28590284-28590518)
chr3 (64-140)||(8790009-8790085)
chr3 (67-127)||(42529433-42529493)
chr3 (82-189)||(50574735-50574842)
chr3 (65-127)||(28409459-28409521)
chr3 (78-140)||(51569819-51569881)
chr3 (63-140)||(37897583-37897660)
[»] chr1 (10 HSPs)
chr1 (68-140)||(36472638-36472710)
chr1 (71-136)||(44751973-44752038)
chr1 (65-136)||(18635708-18635779)
chr1 (64-140)||(32336724-32336800)
chr1 (72-140)||(32423556-32423624)
chr1 (64-126)||(16934334-16934396)
chr1 (87-128)||(40009079-40009120)
chr1 (62-95)||(43183776-43183809)
chr1 (64-128)||(10799194-10799258)
chr1 (63-99)||(49294532-49294568)
[»] chr4 (14 HSPs)
chr4 (64-139)||(8456800-8456875)
chr4 (67-140)||(2097082-2097155)
chr4 (64-140)||(30979818-30979894)
chr4 (65-138)||(42687614-42687687)
chr4 (72-140)||(38020376-38020444)
chr4 (69-118)||(5251893-5251942)
chr4 (70-135)||(38272968-38273033)
chr4 (64-112)||(29728814-29728862)
chr4 (65-133)||(38450695-38450763)
chr4 (77-140)||(20228276-20228339)
chr4 (64-131)||(25391012-25391079)
chr4 (65-140)||(50289734-50289809)
chr4 (94-140)||(6478420-6478466)
chr4 (65-131)||(9524640-9524703)
[»] chr5 (6 HSPs)
chr5 (62-140)||(6296846-6296924)
chr5 (68-140)||(10635335-10635407)
chr5 (67-140)||(29814951-29815024)
chr5 (64-140)||(10707783-10707859)
chr5 (77-140)||(9860763-9860827)
chr5 (65-99)||(16609724-16609758)
[»] chr2 (11 HSPs)
chr2 (64-140)||(26009785-26009861)
chr2 (64-140)||(10429871-10429947)
chr2 (64-133)||(32103573-32103642)
chr2 (64-132)||(1652530-1652598)
chr2 (68-139)||(8734464-8734535)
chr2 (64-99)||(26849275-26849310)
chr2 (64-99)||(36959382-36959417)
chr2 (71-125)||(14195193-14195247)
chr2 (86-140)||(41508180-41508234)
chr2 (66-98)||(16452245-16452277)
chr2 (73-137)||(32970250-32970314)
[»] chr7 (8 HSPs)
chr7 (64-140)||(33084943-33085019)
chr7 (64-128)||(33872840-33872905)
chr7 (64-116)||(12272484-12272536)
chr7 (65-129)||(44184249-44184313)
chr7 (64-115)||(32002148-32002199)
chr7 (64-99)||(41437125-41437160)
chr7 (64-98)||(46976974-46977008)
chr7 (64-117)||(36025584-36025637)
[»] chr8 (8 HSPs)
chr8 (69-140)||(12136496-12136567)
chr8 (66-133)||(14239266-14239333)
chr8 (79-129)||(12020069-12020119)
chr8 (68-132)||(5431627-5431690)
chr8 (64-140)||(34453764-34453840)
chr8 (65-139)||(36665273-36665347)
chr8 (78-140)||(24289179-24289245)
chr8 (66-127)||(26055447-26055508)
[»] chr6 (2 HSPs)
chr6 (72-140)||(31957881-31957949)
chr6 (70-140)||(29169533-29169603)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 28590518 - 28590284
Alignment:
Q  2 ttctagtttgaatttatatgcaaatagtttaattgaattggtaacagttaaacttttgaaatgggggttgggtaactcaactggtttgagctaagggaca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28590518 ttctagtttgaatttatatgcaaatagtttaattgaattggtaacagttaaacttttgaaatgggggttgggtaactcaactggtttgagctaagggaca 28590419  T
Q  102 aggtgttggaggtcctgagttcaaacccggacaaaggagnnnnnnnnctaatctaacaactaataccgaacatttgccgctcaaaaaagttaagcttttg 201  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  28590418 aggtgttggaggtcctgagttcaaacccggacaaaggagaaaaaaaactaatctaacaactaataccgaacatttaccgctcaaaaatgttaagcttttg 28590319  T
Q  202 aaatgtttttaagtcttgaagaacattcaaagggct 237  Q
    ||||| ||||||||||||||||||||||||||||||    
T  28590318 aaatg-ttttaagtcttgaagaacattcaaagggct 28590284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 8790085 - 8790009
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||||| | |||||||||||||||||||||||||  | ||||||||||||| |||||||||| ||||| ||||    
T  8790085 gggggttgggcagctcaactggtttgagctaagggacacagagttggaggtcctgggttcaaacccagacaacggag 8790009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 42529433 - 42529493
Alignment:
Q  67 ggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaac 127  Q
    ||||||||| |||| |||||||||||||||||| |||| |||||||||| |||||||||||    
T  42529433 ggttgggtagctcagctggtttgagctaagggataaggagttggaggtcatgagttcaaac 42529493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 50574842 - 50574735
Alignment:
Q  82 ctggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggagnnnnnnnnctaatctaacaactaataccgaacatttgccgc 181  Q
    |||||||||||||||||| |||| ||||||||||||| ||| ||||||| |  ||||||        |||||||||||||||||  | ||||||||||      
T  50574842 ctggtttgagctaagggataaggagttggaggtcctgggttgaaacccgaatgaaggagaaaaaaaactaatctaacaactaattactaacatttgccat 50574743  T
Q  182 tcaaaaaa 189  Q
    ||||||||    
T  50574742 tcaaaaaa 50574735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 28409521 - 28409459
Alignment:
Q  65 ggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaac 127  Q
    ||||||||||||||||||||| |||||||||||||  | | ||||||||||| | ||||||||    
T  28409521 ggggttgggtaactcaactgggttgagctaagggaagatgagttggaggtcccgggttcaaac 28409459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 51569819 - 51569881
Alignment:
Q  78 tcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||| ||||||||||||||||| |||| ||||||||| ||| |||||||| ||||| ||||||    
T  51569819 tcaattggtttgagctaagggaaaaggagttggaggttctgggttcaaactcggacgaaggag 51569881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 37897583 - 37897660
Alignment:
Q  63 tgggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    ||||| ||||||| ||||||||| ||| ||| | ||| || | ||||||||||||| |||||||||| ||||| ||||    
T  37897583 tggggattgggtagctcaactggattgggctgaaggataaagagttggaggtcctgggttcaaacccagacaagggag 37897660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 36472710 - 36472638
Alignment:
Q  68 gttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||| |||||||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  36472710 gttgggtagctcaactggtctgagctaagggataaggagttggaggtcctgggttcaaacccggacaaaggag 36472638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 44752038 - 44751973
Alignment:
Q  71 gggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaa 136  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||    
T  44752038 gggtagctcaactggtttgagctaagggataaggggttggaggttctgggttcaaacccggacaaa 44751973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 18635779 - 18635708
Alignment:
Q  65 ggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaa 136  Q
    |||||||||||  ||||||||| |||||||||||| |||| ||| ||||||||| ||||||| |||||||||    
T  18635779 ggggttgggtagttcaactggtctgagctaagggataaggagtttgaggtcctgggttcaaatccggacaaa 18635708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 32336800 - 32336724
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||||||| ||||||| |||| || ||||||| |||| |||| ||||| || ||||||||| |||||||||||    
T  32336800 gggggttgggtagctcaactcgtttaagttaagggataaggagttgaaggtcttgggttcaaaccaggacaaaggag 32336724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 32423624 - 32423556
Alignment:
Q  72 ggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||| |||| ||||||||| |||||||| |||  ||||||| || || |||||||||||||||||||||    
T  32423624 ggtagctcagctggtttgaactaagggataagaagttggagttcttgggttcaaacccggacaaaggag 32423556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 16934396 - 16934334
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaa 126  Q
    |||||||||||||||||| | |||||||| |||||| || | ||||||||| ||| |||||||    
T  16934396 gggggttgggtaactcaagttgtttgagccaagggaaaatgagttggaggttctgggttcaaa 16934334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 40009120 - 40009079
Alignment:
Q  87 ttgagctaagggacaaggtgttggaggtcctgagttcaaacc 128  Q
    ||||||||||||| |||| ||||||||||||| |||||||||    
T  40009120 ttgagctaagggaaaaggagttggaggtcctgcgttcaaacc 40009079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 43183809 - 43183776
Alignment:
Q  62 atgggggttgggtaactcaactggtttgagctaa 95  Q
    |||||||||||||| |||||||||||||||||||    
T  43183809 atgggggttgggtagctcaactggtttgagctaa 43183776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 10799194 - 10799258
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacc 128  Q
    |||| ||||||| ||||||| ||||||||||||||| |||  |||| || ||||| |||||||||    
T  10799194 ggggattgggtagctcaactagtttgagctaagggataagtagttgaagttcctgggttcaaacc 10799258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 49294532 - 49294568
Alignment:
Q  63 tgggggttgggtaactcaactggtttgagctaaggga 99  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  49294532 tgggggttgggtagctcaactggtttgagttaaggga 49294568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 8456800 - 8456875
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaagga 139  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||    
T  8456800 ggggcttgggtagctcaactggtttgagctaagggataaggagttggatgtcctgggttcaaacccggacaaagga 8456875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 2097082 - 2097155
Alignment:
Q  67 ggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    ||||||||| ||||||| ||||||||||||||  |||| ||||||||||||| |||||||||||||||| ||||    
T  2097082 ggttgggtagctcaactagtttgagctaagggttaaggagttggaggtcctgggttcaaacccggacaagggag 2097155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 30979818 - 30979894
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||||| || | |||||||||||| ||||||    
T  30979818 ggggattgggtagctcaactggtttgagctaagggataaggagttggaggtcttgggctcaaacccggacgaaggag 30979894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 42687614 - 42687687
Alignment:
Q  65 ggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaagg 138  Q
    ||||||||||  |||||||||||||| |||| ||| |||| ||| |||||||||||||||||||||||| ||||    
T  42687614 ggggttgggtcgctcaactggtttgatctaaaggataaggagttcgaggtcctgagttcaaacccggacgaagg 42687687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 38020376 - 38020444
Alignment:
Q  72 ggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||| ||||||||||||||||||||||  |||| |||||||||||   |||||||||||||| ||||||    
T  38020376 ggtagctcaactggtttgagctaagggttaaggagttggaggtccaaggttcaaacccggacgaaggag 38020444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 5251942 - 5251893
Alignment:
Q  69 ttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctg 118  Q
    ||||||| |||||||||||||||| |||||| |||| |||||||||||||    
T  5251942 ttgggtagctcaactggtttgagccaagggaaaaggagttggaggtcctg 5251893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 38273033 - 38272968
Alignment:
Q  70 tgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaa 135  Q
    |||||| ||||||||||||||||||||||| |||  ||||| ||| ||  ||||||||||||||||    
T  38273033 tgggtagctcaactggtttgagctaagggataagaagttgggggttcttggttcaaacccggacaa 38272968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 29728862 - 29728814
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggag 112  Q
    |||||||||||| ||||||||||||||||||||||  |||| |||||||    
T  29728862 gggggttgggtagctcaactggtttgagctaagggttaaggagttggag 29728814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 38450695 - 38450763
Alignment:
Q  65 ggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggac 133  Q
    ||||||||||| ||||||||||||||||||||||  |||  ||||||||  ||| ||||||| ||||||    
T  38450695 ggggttgggtagctcaactggtttgagctaagggttaagaagttggaggctctgggttcaaatccggac 38450763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 20228276 - 20228339
Alignment:
Q  77 ctcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    ||||||| ||||||||||||||  |||| |||||||||| || |||||||||| || |||||||    
T  20228276 ctcaactagtttgagctaagggttaaggagttggaggtcttgggttcaaacccagataaaggag 20228339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 25391012 - 25391079
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccgg 131  Q
    |||| ||||||| |||| |||||||||||||||||| || | |||||||||  || ||||||||||||    
T  25391012 ggggattgggtagctcatctggtttgagctaagggaaaaagagttggaggtagtgggttcaaacccgg 25391079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 50289734 - 50289809
Alignment:
Q  65 ggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||| |||| || || |||||||| |||||| | |||  ||||||||||||  |||||||||||||||||||||    
T  50289734 ggggtttggtagcttaagtggtttgaactaaggcaaaagaagttggaggtcctaggttcaaacccggacaaaggag 50289809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 6478420 - 6478466
Alignment:
Q  94 aagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||| |||| |||||||| |||| |||||||||||||||||||||    
T  6478420 aagggaaaaggagttggagggcctgtgttcaaacccggacaaaggag 6478466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 9524640 - 9524703
Alignment:
Q  65 ggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccgg 131  Q
    ||||||||||||||||| ||||||||||||| | | |||| ||   |||||||| ||||||||||||    
T  9524640 ggggttgggtaactcaagtggtttgagctaaagaataaggagt---aggtcctgggttcaaacccgg 9524703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 6296846 - 6296924
Alignment:
Q  62 atgggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||||||||| ||||| ||||||||||||||||| |||| ||||||||| ||| |||||||||| ||||||||||    
T  6296846 atgggggttgggtagctcaattggtttgagctaagggataaggagttggaggttctgggttcaaacccagacaaaggag 6296924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 10635407 - 10635335
Alignment:
Q  68 gttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||| ||||||||||||||||||||||| |||| |||||||||||||  ||||||||||| | ||||||    
T  10635407 gttgggtagctcaactggtttgagctaagggataaggagttggaggtcctggcttcaaacccgggcgaaggag 10635335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 29815024 - 29814951
Alignment:
Q  67 ggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    ||||||||| ||||| ||||||||||||||||| |||| ||||||||||||  ||||||||| | |||||||||    
T  29815024 ggttgggtagctcaattggtttgagctaagggataaggagttggaggtcctaggttcaaacctgaacaaaggag 29814951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 10707859 - 10707783
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    ||||||||| ||||||||||| ||| |||||||||| |||| ||| ||||| ||||||| |||||||||| ||||||    
T  10707859 gggggttggataactcaactgctttaagctaagggataaggagtttgaggttctgagtttaaacccggacgaaggag 10707783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 9860827 - 9860763
Alignment:
Q  77 ctcaactggtttgagctaagggacaa-ggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    ||||||||||||||||||||||  || || |||||||||||||||||||||| | ||||||||||    
T  9860827 ctcaactggtttgagctaagggttaaaggagttggaggtcctgagttcaaactcagacaaaggag 9860763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 16609758 - 16609724
Alignment:
Q  65 ggggttgggtaactcaactggtttgagctaaggga 99  Q
    ||||||||||||||||||||||||||||| |||||    
T  16609758 ggggttgggtaactcaactggtttgagcttaggga 16609724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 26009785 - 26009861
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||||||| |||||||||||||||| |||||| || | ||||||||||||| |||||||||||||| ||||||    
T  26009785 gggggttgggtagctcaactggtttgagccaagggataaagagttggaggtcctgggttcaaacccggacgaaggag 26009861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 10429947 - 10429871
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||||||| ||||||||||||||||||||||| |||| || ||||||| |  |||||||||| || |||||||    
T  10429947 gggggttgggtagctcaactggtttgagctaagggataaggagtaggaggtctttggttcaaacccagaaaaaggag 10429871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 32103573 - 32103642
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggac 133  Q
    |||||||||||| ||||||| |||||||||||||||  ||| |||||||||| || ||||||||| ||||    
T  32103573 gggggttgggtagctcaactagtttgagctaagggatgaggagttggaggtcatgggttcaaacctggac 32103642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 1652530 - 1652598
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccgga 132  Q
    |||| ||||||| ||||||||||||||||||||||| |||   |||||||||||  |||||||||||||    
T  1652530 ggggattgggtagctcaactggtttgagctaagggataagaaattggaggtcctaggttcaaacccgga 1652598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 8734464 - 8734535
Alignment:
Q  68 gttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaagga 139  Q
    |||||||| || |||||||||||||| ||||| |||| |||||||||  || ||||||| ||||| ||||||    
T  8734464 gttgggtagcttaactggtttgagctgagggataaggagttggaggtattgggttcaaatccggataaagga 8734535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 26849310 - 26849275
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaaggga 99  Q
    |||||||||||| |||||||||||||||||||||||    
T  26849310 gggggttgggtagctcaactggtttgagctaaggga 26849275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 36959382 - 36959417
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaaggga 99  Q
    |||||||||||| |||||||||||||||||||||||    
T  36959382 gggggttgggtagctcaactggtttgagctaaggga 36959417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 14195247 - 14195193
Alignment:
Q  71 gggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaa 125  Q
    ||||| ||||||||||||||||||||||  |||| ||||||||||| | ||||||    
T  14195247 gggtagctcaactggtttgagctaagggttaaggagttggaggtccagtgttcaa 14195193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 41508234 - 41508180
Alignment:
Q  86 tttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||||||||| |||  ||| ||||| |||||||||||||||||| ||||||    
T  41508234 tttgagctaagggataagaagttagaggttctgagttcaaacccggacgaaggag 41508180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 16452277 - 16452245
Alignment:
Q  66 gggttgggtaactcaactggtttgagctaaggg 98  Q
    |||||||||| ||||||||||||||||||||||    
T  16452277 gggttgggtagctcaactggtttgagctaaggg 16452245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 32970250 - 32970314
Alignment:
Q  73 gtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaag 137  Q
    ||||||||| ||||||||| |||| || |||  ||| |||||||||||||||||| || ||||||    
T  32970250 gtaactcaagtggtttgagttaagtgaaaagaagtttgaggtcctgagttcaaactcgaacaaag 32970314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 33085019 - 33084943
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||||||| ||||||||||||||||||||||| | || ||||||||||||| ||| ||||| |||| ||||||    
T  33085019 gggggttgggtagctcaactggtttgagctaagggatatggagttggaggtcctgggttaaaacctggacgaaggag 33084943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 33872905 - 33872840
Alignment:
Q  64 gggggttgggtaactcaactggtttgagct-aagggacaaggtgttggaggtcctgagttcaaacc 128  Q
    |||||||||||||||||||||||||||||| |||||| |||| |||||||||  || |||||||||    
T  33872905 gggggttgggtaactcaactggtttgagctaaagggaaaaggagttggaggttttgggttcaaacc 33872840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 12272536 - 12272484
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcc 116  Q
    |||||||||||||||||||||||||||| ||| ||  |||| |||||||||||    
T  12272536 gggggttgggtaactcaactggtttgagttaatggttaaggagttggaggtcc 12272484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 44184313 - 44184249
Alignment:
Q  65 ggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaaccc 129  Q
    ||||||| |||||||||||||||||| |||||||  || | |||||||||| || ||||||||||    
T  44184313 ggggttgagtaactcaactggtttgaactaagggttaatgagttggaggtcatgtgttcaaaccc 44184249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 32002199 - 32002148
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtc 115  Q
    ||||||||| || ||||||||||||||||||||||  |||||||||| ||||    
T  32002199 gggggttggttagctcaactggtttgagctaagggttaaggtgttggcggtc 32002148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 41437125 - 41437160
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaaggga 99  Q
    |||||||||||| |||||||||||||||||||||||    
T  41437125 gggggttgggtagctcaactggtttgagctaaggga 41437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 46977008 - 46976974
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaaggg 98  Q
    |||||||||||| ||||||||||||||||||||||    
T  46977008 gggggttgggtagctcaactggtttgagctaaggg 46976974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 36025584 - 36025637
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcct 117  Q
    |||||||||||||||||| ||| |||||| |||||| || | ||||||||||||    
T  36025584 gggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtcct 36025637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 12136496 - 12136567
Alignment:
Q  69 ttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    ||||||||||||||||||||||||||||| | |||  ||||||||| ||| |||||||  ||||||||||||    
T  12136496 ttgggtaactcaactggtttgagctaaggaataagaagttggaggtactgggttcaaagtcggacaaaggag 12136567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 14239333 - 14239266
Alignment:
Q  66 gggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggac 133  Q
    |||||||||| |||||||||| ||||||| |||| |||| ||||||||||||| ||| ||||| ||||    
T  14239333 gggttgggtagctcaactggtctgagctaggggataaggagttggaggtcctgggtttaaacctggac 14239266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 12020069 - 12020119
Alignment:
Q  79 caactggtttgagctaagggacaaggtgttggaggtcctgagttcaaaccc 129  Q
    ||||||||||||| ||||||| |||| ||||||||||||| ||||||||||    
T  12020069 caactggtttgagttaagggataaggagttggaggtcctgggttcaaaccc 12020119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 5431627 - 5431690
Alignment:
Q  68 gttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccgga 132  Q
    |||||||| |||| ||| |||||||||||||| |||| ||||||||| |||||||||||| ||||    
T  5431627 gttgggtagctcagctgatttgagctaagggataaggagttggaggt-ctgagttcaaactcgga 5431690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 34453840 - 34453764
Alignment:
Q  64 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||||||| | |||||| | |||| ||||||| |||| || ||||||| || | |||||||||||||||||||    
T  34453840 gggggttgggtagcacaactgatatgagttaagggataaggagtaggaggtcatgggatcaaacccggacaaaggag 34453764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 36665347 - 36665273
Alignment:
Q  65 ggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaagga 139  Q
    ||||||||||| || |||||||||||||||||||  |||  | ||| | | ||| ||||||||||||||||||||    
T  36665347 ggggttgggtagcttaactggtttgagctaagggttaagtagatggggatactgggttcaaacccggacaaagga 36665273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 24289179 - 24289245
Alignment:
Q  78 tcaactggtttgagctaag----ggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||||||||||||||||    |||||||| |||||||| |||| ||||||||||| || ||||||    
T  24289179 tcaactggtttgagctaagtaagggacaaggagttggaggacctgggttcaaacccgaacgaaggag 24289245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 26055447 - 26055508
Alignment:
Q  66 gggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaac 127  Q
    ||||||||||  |||||||||||| | ||||||| |||| |||||||||| || ||||||||    
T  26055447 gggttgggtatttcaactggtttgtgataagggataaggagttggaggtcatgggttcaaac 26055508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 31957881 - 31957949
Alignment:
Q  72 ggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||| ||| ||||||||||||||||||| |||| ||||||||||||| ||| |||||| || |||||||    
T  31957881 ggtagctcgactggtttgagctaagggataaggagttggaggtcctgggttgaaacccagataaaggag 31957949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 29169533 - 29169603
Alignment:
Q  70 tgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccggacaaaggag 140  Q
    |||||| ||||||  |||||||| |||||| |||| |||||||||| ||| |||||||  |||||||||||    
T  29169533 tgggtagctcaacctgtttgagccaagggataaggagttggaggtcttgaattcaaacatggacaaaggag 29169603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University