View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13854_high_14 (Length: 214)
Name: NF13854_high_14
Description: NF13854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13854_high_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 28590076 - 28590289
Alignment:
| Q |
1 |
acaccttaaataacataacaaggatattgccgcatttaccagttaagaataaccactaacagaaaaaacacaatttatttactaaacatatttccgcccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28590076 |
acaccttaaataacataacaaggatattgccgcatttaccagttaagaataaccactaacgaaaaaaacacaatttatttactaaacatatttccgcccc |
28590175 |
T |
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| Q |
101 |
ttaccattttaccagcttgcaattagacatcgatacaattgtcaaaaccaagtccaatgcatcacaaaaaccaatagttgcccctcatcaaaaccaatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28590176 |
ttaccattttaccagcttgcaattagacatcgatacaattgtcaaaaccaagtccaatgcatcacaaaaaccaatagttgcccctcatcaaaaccaatac |
28590275 |
T |
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| Q |
201 |
ttaaccatagccct |
214 |
Q |
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|||||||||||||| |
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| T |
28590276 |
ttaaccatagccct |
28590289 |
T |
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