View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13854_high_4 (Length: 481)
Name: NF13854_high_4
Description: NF13854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13854_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 9 - 464
Target Start/End: Complemental strand, 35248147 - 35247692
Alignment:
| Q |
9 |
gataatactcacttttctgtttctgttttttctaaagacaaattcagaatcagaaaatgtcagaaaagcccttgtcaaattcatgcatcaacttgaacca |
108 |
Q |
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| T |
35248147 |
gataatactcacttttctgtttctgttttttctaaagacaaattcagaatcagaaaatgtcagaaaagcccttgtcaaattcatgcatcaacttgaacca |
35248048 |
T |
|
| Q |
109 |
cctgatcagaattcgatgcagggttggaacctcacatcagatccatgcgctcttaactggcacggtgtaacttgttacgcaaacaaccaatacattaaga |
208 |
Q |
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| T |
35248047 |
cctgatcagaattcgatgcagggttggaacctcacatcagatccatgcgctcataactggctaggtgtaacttgttacgcaaacaaccaatacattaaga |
35247948 |
T |
|
| Q |
209 |
ctatagttcttgaagaacttaatttcaccggcgttctagacgctacttctctttgcattgctaacactcttcagtacctcagcctcaacaacaattactt |
308 |
Q |
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| T |
35247947 |
ctatagttcttgaagaacttaatttcaccggcgttctagacgctacttctctttgcattgctaacactcttcagtacctcagcctcaacaacaattactt |
35247848 |
T |
|
| Q |
309 |
acacggttttatatcggaggatataaaagactgtaagtttttgacacacttgcttcttagtggtaacaaattctctggcaatcttcctgtttccatcccc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35247847 |
acacggttttatatcggaggatataaaagactgtaagtttttgacacacttgcttcttagtggtaacaaattctctggcaatcttcctgtttccattcct |
35247748 |
T |
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| Q |
409 |
caactacgtaacatgaagcgcctacatgtttcagacaatctcttcaccggaaacct |
464 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35247747 |
caactacgtaacatgaagcgcctgcatgtttcagacaatctcttcaccggaaacct |
35247692 |
T |
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