View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13854_high_5 (Length: 435)
Name: NF13854_high_5
Description: NF13854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13854_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 417
Target Start/End: Original strand, 34831729 - 34832148
Alignment:
| Q |
6 |
gatgtcgaagaatatacaaatgaaaagatttatatgttcaatgtctaagattttgtgtgaagatgtaacgtctgatcacacttgtatcattgctcaaagc |
105 |
Q |
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| T |
34831729 |
gatgttgaacaatatacaaatgaaaagatttatatgttcaatgtctaagattttgtgtgaaaatgtaatgtctgatcacacttgtatcattgctcaaagc |
34831828 |
T |
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| Q |
106 |
atgatctcagaaacttccttcatgacccaacaaactcttgtttcnnnnnnnnnnnnnnnnnatagaaaaaagtatttaaatgatatataacattaacata |
205 |
Q |
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| T |
34831829 |
atgatctcagaaacttccttcatgacccaacaaactcttgtttcttttttatattttttttatagaaaaaagtatttaaatgatatataacattaacata |
34831928 |
T |
|
| Q |
206 |
aattatattttatgatgacatttaatgaaaatatattattttgccacgtcaccttatttttgcagtattgtaaaattgatgta--------tgacagaaa |
297 |
Q |
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| T |
34831929 |
aattatattttatgatgacatttaatgaaaatatattattttgccacgtcaccttatttttgcagtattgtaaaattgatgtatgagtgtatgacagaaa |
34832028 |
T |
|
| Q |
298 |
aataaaaatttctagttagatgtccgtgtaaaagtttatgtatttccataaaatgtaaagtaaaaatgtgaccaaactctttgttaattaatgtggaaaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34832029 |
aataaaaatttctagttagatgtccgtgtaaaagtttatgtatttccataaaatgtaaagtaaaaatgtgaccaaactctttgttaattaatgtggaaaa |
34832128 |
T |
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| Q |
398 |
atgacttaaacattatgatg |
417 |
Q |
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| T |
34832129 |
atgacttatacattatgatg |
34832148 |
T |
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