View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13854_high_9 (Length: 251)
Name: NF13854_high_9
Description: NF13854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13854_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10483097 - 10483336
Alignment:
| Q |
1 |
tgtttcacctagcatattttgttggaatgcccataaactcgtcagactggattgtgttgtttaatgggatattatagagaactaaactattggttttttc |
100 |
Q |
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| T |
10483097 |
tgtttcacctagcatattttgttggaatgcccataaactcgtcagactggattgtgttgtttaatgggatattatatagaactaaactattggttttttc |
10483196 |
T |
|
| Q |
101 |
acacacaaactggaattccaataaaggatgttgcaaggcaactgaagtgacacacagaaagacttcagtgttaagcannnnnnncagccgttatggctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10483197 |
acacacaaactggaattccaataaaggatgttacaaggcaactgaagtgacacacagaaagacttcagtgttaagcatttttttcagccgttatggctcc |
10483296 |
T |
|
| Q |
201 |
tttcttctttataggtttatcagatgcagttttcagtatt |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10483297 |
tttcttctttataggtttatcagatgcagttttcagtatt |
10483336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 7466718 - 7466618
Alignment:
| Q |
142 |
ctgaagtgacacacagaaagacttc--agtgttaagcannnnnnncagccgttatggctcctttcttctttataggtttatcagatgcagttttcagtat |
239 |
Q |
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| T |
7466718 |
ctgaagtgacacacagaaagacttctcattgtttagcatttttttcagccgttctggctcctttcttcttttcaggtttatcagatgcagttttcagtat |
7466619 |
T |
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| Q |
240 |
t |
240 |
Q |
| |
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| |
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| T |
7466618 |
t |
7466618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 10444553 - 10444608
Alignment:
| Q |
185 |
cagccgttatggctcctttcttctttataggtttatcagatgcagttttcagtatt |
240 |
Q |
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| T |
10444553 |
cagccgttttggctcatttcttctttttaggtttatcatatgcaattttcagtatt |
10444608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 10512404 - 10512520
Alignment:
| Q |
23 |
tggaatgcccataaactcgtc--agactggattgtgttgtttaatgggatattatagagaactaaactattggttttttcac--acacaaactggaattc |
118 |
Q |
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||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||| ||| | ||||||||||||||| ||| |||||||| | | |
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| T |
10512404 |
tggaatgcccataaattcgtatgagattggattgtgttgtttaatgg---attatagag--ctagagtattggttttttcacatacaaaaactggagtcc |
10512498 |
T |
|
| Q |
119 |
caataaaggatgttgcaaggca |
140 |
Q |
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|||| ||||||||| ||||||| |
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| T |
10512499 |
caatcaaggatgttacaaggca |
10512520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 10457343 - 10457487
Alignment:
| Q |
1 |
tgtttcacctagcatattttgttgga-----atgcccataaactcgtc--agactggattgtgttgtttaatgggatattatagagaactaaactattgg |
93 |
Q |
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||||| |||||||||||||||||||| ||||||||||| | || ||||||||| ||||| |||||||||||| ||||||| | | |||| |
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| T |
10457343 |
tgttttacctagcatattttgttggagaggaatgcccataaattggtatgagactggatcgtgttttttaatgggatac-----agaactagagtgttgg |
10457437 |
T |
|
| Q |
94 |
ttttttcacacac--aaactggaattccaataaaggatgttgcaaggcaa |
141 |
Q |
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||||||||||||| |||||||| | |||||||| |||||| |||||||| |
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| T |
10457438 |
ttttttcacacacaaaaactggagtcccaataaaagatgttacaaggcaa |
10457487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 10457758 - 10457798
Alignment:
| Q |
194 |
tggctcctttcttctttataggtttatcagatgcagttttc |
234 |
Q |
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| T |
10457758 |
tggctcctttcttctttctaggtttttcagatgcatttttc |
10457798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 24050851 - 24050797
Alignment:
| Q |
186 |
agccgttatggctcctttcttctttataggtttatcagatgcagttttcagtatt |
240 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24050851 |
agccgttttggctcctttcttctttttaggtttatcagatgcagttttcagtatt |
24050797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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