View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13854_low_14 (Length: 244)

Name: NF13854_low_14
Description: NF13854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13854_low_14
NF13854_low_14
[»] chr2 (12 HSPs)
chr2 (1-227)||(10482858-10483085)
chr2 (16-220)||(10457339-10457544)
chr2 (32-220)||(10457546-10457733)
chr2 (71-219)||(10501013-10501161)
chr2 (73-204)||(10512389-10512520)
chr2 (106-219)||(10482598-10482711)
chr2 (94-215)||(7466738-7466857)
chr2 (128-220)||(10538611-10538703)
chr2 (72-220)||(10483093-10483237)
chr2 (164-220)||(10467413-10467469)
chr2 (174-220)||(9084204-9084250)
chr2 (179-220)||(10854797-10854838)
[»] chr1 (1 HSPs)
chr1 (71-217)||(24050911-24051048)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10483085 - 10482858
Alignment:
Q  1 gacagtctgttcacattagatgaaacaaatgtgaagtccttctgcaagtctcttcaacaatgg-tgttcaaattgccttgtaacatcttttattaggact 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10483085 gacagtctgttcacattagatgaaacaaatgtgaagtccttctgcaagtctcttcaacaatggatgttcaaattgccttgtaacatcttttattaggact 10482986  T
Q  100 ccagtttttgtgtgtgaaaaaaccaacactctagttctgtatcccatttaaaaacacaatccagtctcgtacaaaattatgggcattcctctcgaacaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10482985 ccagtttttgtgtgtgaaaaaaccaacactctagttctgtatcccatttaaaaacacaatccagtctcgtacaaatttatgggcattcctctcgaacaaa 10482886  T
Q  200 atatgctaggtgaaacaaatgcttatgt 227  Q
    ||||||||||||||||||||||||||||    
T  10482885 atatgctaggtgaaacaaatgcttatgt 10482858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 10457544 - 10457339
Alignment:
Q  16 ttagatgaaacaaatgtgaagtccttctgcaagtctcttcaacaatggtg-ttcaaattgccttgtaacatcttttattaggactccagtttttgtgtgt 114  Q
    ||||||||||||| ||||||||| ||||||||||| ||| || ||||    |||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  10457544 ttagatgaaacaattgtgaagtctttctgcaagtcactttaataatgaaccttcacattgccttgtaacatcttttattgggactccagtttttgtgtgt 10457445  T
Q  115 gaaaaaaccaacactctagttctgtatcccatttaaaaacacaatccagtctcgtacaaaattatgggcattcctctcgaacaaaatatgctaggtgaaa 214  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| || ||||||||||||||||| ||||||||||||||||| |||    
T  10457444 gaaaaaaccaacactctagttctgtatcccattaaaaaacacgatccagtctcataccaatttatgggcattcctctccaacaaaatatgctaggtaaaa 10457345  T
Q  215 caaatg 220  Q
    ||||||    
T  10457344 caaatg 10457339  T

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Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 10457733 - 10457546
Alignment:
Q  32 tgaagtccttctgcaagtctcttcaacaatgg-tgttcaaattgccttgtaacatcttttattaggactccagtttttgtgtgtgaaaaaaccaacactc 130  Q
    ||||||| |||||| |||  ||||| |||||  ||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||| ||||    
T  10457733 tgaagtctttctgcgagtaacttcagcaatgaatgttctaattgccttggaacatcctttattcggactccagtttttgtgtgtgaaaaaagcaatactc 10457634  T
Q  131 tagttctgtatcccatttaaaaacacaatccagtctcgtacaaaattatgggcattcctctcgaacaaaatatgctaggtgaaacaaatg 220  Q
    ||| |||  |||||||| || |||||||||||||||| ||| || ||||||| | ||||||| |||||||||||||||||||||||||||    
T  10457633 taggtct--atcccattaaacaacacaatccagtctcatacgaatttatgggtaatcctctccaacaaaatatgctaggtgaaacaaatg 10457546  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 10501161 - 10501013
Alignment:
Q  71 attgccttgtaacatcttttattaggactccagtttttgtgtgtgaaaaaaccaacactctagttctgtatcccatttaaaaacacaatccagtctcgta 170  Q
    |||| ||| ||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||| | ||||||| || ||||| || ||||||| ||    
T  10501161 attggcttttaacatcctttattgggactccagtttttttgtgtgaaaaaaccaacaatctagttctatctcccattcaacaacactattcagtctcata 10501062  T
Q  171 caaaattatgggcattcctctcgaacaaaatatgctaggtgaaacaaat 219  Q
    |||| |||  |||||||||||  ||||||||||||||||||||||||||    
T  10501061 caaatttagtggcattcctcttcaacaaaatatgctaggtgaaacaaat 10501013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 10512520 - 10512389
Alignment:
Q  73 tgccttgtaacatcttttattaggactccagtttttgtgtgtgaaaaaaccaacactctagttctgtatcccatttaaaaacacaatccagtctcgtaca 172  Q
    |||||||||||||| || ||| |||||||||||||||| |||||||||||||| ||||||| ||| ||  ||||| || ||||||||||| |||| |||     
T  10512520 tgccttgtaacatccttgattgggactccagtttttgtatgtgaaaaaaccaatactctagctctataatccattaaacaacacaatccaatctcatacg 10512421  T
Q  173 aaattatgggcattcctctcgaacaaaatatg 204  Q
    || ||||||||||||| |||||||||||||||    
T  10512420 aatttatgggcattccactcgaacaaaatatg 10512389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 10482711 - 10482598
Alignment:
Q  106 tttgtgtgtgaaaaaaccaacactctagttctgtatcccatttaaaaacacaatccagtctcgtacaaaattatgggcattcctctcgaacaaaatatgc 205  Q
    ||||||| |||||||| ||| ||||||||||| ||||| ||| || |||| |||||  |||| ||  ||||| || ||||||||||||||||||||||||    
T  10482711 tttgtgtttgaaaaaagcaatactctagttctatatcctattaaacaacataatcctatctcttaggaaattttgagcattcctctcgaacaaaatatgc 10482612  T
Q  206 taggtgaaacaaat 219  Q
    |||||||| |||||    
T  10482611 taggtgaaccaaat 10482598  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 7466738 - 7466857
Alignment:
Q  94 aggactccagtttttgtgtgtgaaaaaaccaacactctagttctgtatcccatttaaaaacacaatccagtctcgtacaaaattatgggcattcctctcg 193  Q
    ||||||||||||||||||||  | |||||||| | | ||||| | |||| |||  || ||||||||||| |||| |||||| |||| | ||||||| ||     
T  7466738 aggactccagtttttgtgtg--acaaaaccaataatttagttttatatcacatcaaacaacacaatccaatctcctacaaatttattgtcattcctatca 7466835  T
Q  194 aacaaaatatgctaggtgaaac 215  Q
    ||||||||||||||||||||||    
T  7466836 aacaaaatatgctaggtgaaac 7466857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 10538703 - 10538611
Alignment:
Q  128 ctctagttctgtatcccatttaaaaacacaatccagtctcgtacaaaattatgggcattcctctcgaacaaaatatgctaggtgaaacaaatg 220  Q
    |||||||| | |||||||||  | ||||||||||| |||| ||| || ||||||| ||||| ||| ||||||||| |||||||| ||||||||    
T  10538703 ctctagttttatatcccattacacaacacaatccaatctcatacgaatttatgggtattcccctccaacaaaataagctaggtgcaacaaatg 10538611  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 10483237 - 10483093
Alignment:
Q  72 ttgccttgtaacatcttttattaggactccagtttttgtgtgtgaaaaaaccaacactctagttct-----gtatcccatttaaaaacacaatccagtct 166  Q
    ||||||||||||||| |||||| | | |||||  |||||||||||||||||||| | | |||||||      ||||||||| || |||||||||||||||    
T  10483237 ttgccttgtaacatcctttattggaattccag--tttgtgtgtgaaaaaaccaatagtttagttctatataatatcccattaaacaacacaatccagtct 10483140  T
Q  167 cgtacaaaattatgggcattcctctcgaacaaaatatgctaggtgaaacaaatg 220  Q
       || |  |||||||||||||     |||||||||||||||||||||||||||    
T  10483139 --gacgagtttatgggcattcc-----aacaaaatatgctaggtgaaacaaatg 10483093  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 10467469 - 10467413
Alignment:
Q  164 tctcgtacaaaattatgggcattcctctcgaacaaaatatgctaggtgaaacaaatg 220  Q
    |||| |||||| ||||||||||||||||| || |||||| | |||||||||||||||    
T  10467469 tctcatacaaatttatgggcattcctctcaaataaaataggttaggtgaaacaaatg 10467413  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 9084204 - 9084250
Alignment:
Q  174 aattatgggcattcctctcgaacaaaatatgctaggtgaaacaaatg 220  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||||    
T  9084204 aattatgggcattcctcgccaacagaatatactaggtgaaacaaatg 9084250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 10854838 - 10854797
Alignment:
Q  179 tgggcattcctctcgaacaaaatatgctaggtgaaacaaatg 220  Q
    |||||||||||||  |||||||||||||||||||| ||||||    
T  10854838 tgggcattcctcttcaacaaaatatgctaggtgaagcaaatg 10854797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 24050911 - 24051048
Alignment:
Q  71 attgccttgtaacatcttttattaggactccagtttttgtgtgtgaaaaaaccaacactctagttctgtatcccatttaaaaacacaatccagtctcgta 170  Q
    |||| |||| ||||||  ||||| | |||| ||||||||||||| ||||||| || ||||||||||| |||| |||| || ||||||||||| |||| |     
T  24050911 attgtcttgcaacatccattattggtactctagtttttgtgtgttaaaaaacaaatactctagttctatatctcattaaacaacacaatccaatctcat- 24051009  T
Q  171 caaaattatgggcattcctctcgaacaaaatatgctaggtgaaacaa 217  Q
            |||||||||||||| ||||||||||||||||||||||||    
T  24051010 --------tgggcattcctctccaacaaaatatgctaggtgaaacaa 24051048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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