View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13854_low_3 (Length: 541)

Name: NF13854_low_3
Description: NF13854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13854_low_3
NF13854_low_3
[»] chr8 (5 HSPs)
chr8 (280-525)||(7094529-7094774)
chr8 (311-525)||(7098262-7098476)
chr8 (1-213)||(7094841-7095053)
chr8 (163-212)||(29821104-29821153)
chr8 (311-359)||(29821255-29821301)
[»] chr3 (3 HSPs)
chr3 (280-525)||(8377027-8377272)
chr3 (1-213)||(8376748-8376960)
chr3 (311-376)||(11035898-11035963)
[»] chr1 (8 HSPs)
chr1 (280-525)||(22362254-22362499)
chr1 (311-484)||(41314684-41314857)
chr1 (163-210)||(33885424-33885471)
chr1 (311-386)||(33885575-33885650)
chr1 (311-386)||(33958602-33958677)
chr1 (163-210)||(33958781-33958828)
chr1 (478-525)||(33885841-33885885)
chr1 (478-525)||(33958367-33958411)
[»] chr5 (4 HSPs)
chr5 (311-484)||(37627819-37627992)
chr5 (311-484)||(37806942-37807121)
chr5 (163-213)||(37807222-37807272)
chr5 (163-208)||(37628097-37628142)
[»] chr7 (7 HSPs)
chr7 (320-484)||(19633345-19633509)
chr7 (311-484)||(1609254-1609431)
chr7 (311-484)||(2186619-2186796)
chr7 (163-213)||(19633621-19633671)
chr7 (166-208)||(28386638-28386680)
chr7 (311-386)||(21270495-21270567)
chr7 (311-386)||(48189367-48189436)
[»] chr4 (2 HSPs)
chr4 (161-212)||(15424763-15424814)
chr4 (478-525)||(11993213-11993257)
[»] scaffold0627 (1 HSPs)
scaffold0627 (320-375)||(3342-3397)
[»] chr2 (1 HSPs)
chr2 (311-359)||(19214968-19215016)
[»] scaffold0042 (5 HSPs)
scaffold0042 (165-212)||(6590-6637)
scaffold0042 (165-212)||(14002-14049)
scaffold0042 (320-375)||(6427-6481)
scaffold0042 (164-210)||(6682-6728)
scaffold0042 (164-210)||(14094-14140)
[»] chr6 (1 HSPs)
chr6 (153-196)||(19990271-19990314)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 280 - 525
Target Start/End: Complemental strand, 7094774 - 7094529
Alignment:
Q  280 ttgagtgataatatatcattttgnnnnnnnnctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 379  Q
    |||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094774 ttgagtgataatatattattttgttttttttctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 7094675  T
Q  380 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094674 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 7094575  T
Q  480 atggggacgtgtatttacagagaaaacaataatgtaacctcctttc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7094574 atggggacgtgtatttacagagaaaacaataatgtaacctcctttc 7094529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 311 - 525
Target Start/End: Complemental strand, 7098476 - 7098262
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098476 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattt 7098377  T
Q  411 ctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggggacgtgtatttacagagaaaacaata 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098376 ctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggggacgtgtatttacagagaaaacaata 7098277  T
Q  511 atgtaacctcctttc 525  Q
    |||||||||||||||    
T  7098276 atgtaacctcctttc 7098262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 7095053 - 7094841
Alignment:
Q  1 caagagcagaacgtctgaatgcacctagaggcctgtattcaattgtgggaaaggaaactttcaatttgtattatcctgttgcttgaagtacttcaataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7095053 caagagcagaacgtctgaatgcacctagaggcctgtattcaattgtgggaaaggaaactttcaatttgtattatcctgttgcttgaagtacttcaataag 7094954  T
Q  101 agttggaggtattagagttattagttaagaaataaatgaacgttgtcgggactttctctagtgtcagtttcgaggacgaaactattttaggtgggtagaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7094953 agttggaggtattagagttattagttaagaaataaatgaacgttgtcgagactttctctagtgccagtttcgaggacgaaactattttaggtgggtagaa 7094854  T
Q  201 tgtaagatcccgg 213  Q
    |||||||||||||    
T  7094853 tgtaagatcccgg 7094841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 29821104 - 29821153
Alignment:
Q  163 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccg 212  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29821104 gtcagtttcgaggacgaaactattttaggtaggtagaatgtaagatcccg 29821153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 29821255 - 29821301
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgt 359  Q
    |||||||| |||||||||||||||||||||| ||||  |||||||||||    
T  29821255 ctttcaaattatatagccaaaattcattatactaat--ttaaatagtgt 29821301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 280 - 525
Target Start/End: Original strand, 8377027 - 8377272
Alignment:
Q  280 ttgagtgataatatatcattttgnnnnnnnnctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 379  Q
    |||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377027 ttgagtgataatatattattttgttttttttctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 8377126  T
Q  380 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377127 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 8377226  T
Q  480 atggggacgtgtatttacagagaaaacaataatgtaacctcctttc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8377227 atggggacgtgtatttacagagaaaacaataatgtaacctcctttc 8377272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 8376748 - 8376960
Alignment:
Q  1 caagagcagaacgtctgaatgcacctagaggcctgtattcaattgtgggaaaggaaactttcaatttgtattatcctgttgcttgaagtacttcaataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8376748 caagagcagaacgtctgaatgcacctagaggcctgtattcaattgtgggaaaggaaactttcaatttgtattatcctgttgcttgaagtacttcaataag 8376847  T
Q  101 agttggaggtattagagttattagttaagaaataaatgaacgttgtcgggactttctctagtgtcagtttcgaggacgaaactattttaggtgggtagaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8376848 agttggaggtattagagttattagttaagaaataaatgaacgttgtcgagactttctctagtgccagtttcgaggacgaaactattttaggtgggtagaa 8376947  T
Q  201 tgtaagatcccgg 213  Q
    |||||||||||||    
T  8376948 tgtaagatcccgg 8376960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 11035963 - 11035898
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttat 376  Q
    |||||||| |||||||||||||| ||||| | ||||||||| |||||||| |||||||||||||||    
T  11035963 ctttcaaattatatagccaaaatccattagactaattattatatagtgtatcctataactatttat 11035898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 280 - 525
Target Start/End: Original strand, 22362254 - 22362499
Alignment:
Q  280 ttgagtgataatatatcattttgnnnnnnnnctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 379  Q
    |||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22362254 ttgagtgataatatattattttgttttttttctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 22362353  T
Q  380 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22362354 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 22362453  T
Q  480 atggggacgtgtatttacagagaaaacaataatgtaacctcctttc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22362454 atggggacgtgtatttacagagaaaacaataatgtaacctcctttc 22362499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 311 - 484
Target Start/End: Complemental strand, 41314857 - 41314684
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41314857 ctttcaaagtatatagccaaaattcattatattaattattaaatggggtaccctataactatttattcctactatttttatgtgtgcacgtgtagatttt 41314758  T
Q  411 ctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41314757 ctcatctttatctcatgttagtattaatttaattaagtataatgatcaaccaatagtatagaacaagaaatggg 41314684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 33885424 - 33885471
Alignment:
Q  163 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcc 210  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  33885424 gtcagttttgaggacgaaattattttaggtgggtagaatgtaagatcc 33885471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 33885575 - 33885650
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatt 386  Q
    |||||||| |||||||||||||| |||| || || |||||| |||||||||||||||| ||||||| |||| ||||    
T  33885575 ctttcaaattatatagccaaaatccattgtactatttattagatagtgtaccctataattatttatgcctattatt 33885650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 33958677 - 33958602
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatt 386  Q
    |||||||| |||||||||||||| |||| || || |||||| |||||||||||||||| ||||||| |||| ||||    
T  33958677 ctttcaaattatatagccaaaatccattgtactatttattagatagtgtaccctataattatttatgcctattatt 33958602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 33958828 - 33958781
Alignment:
Q  163 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcc 210  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  33958828 gtcagttttgaggacgaaattattttaggtgggtagaatgtaagatcc 33958781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 525
Target Start/End: Original strand, 33885841 - 33885885
Alignment:
Q  478 aaatggggacgtgtatttacagagaaaacaataatgtaacctcctttc 525  Q
    |||||||||||||||||||||||| ||||   ||||||||||||||||    
T  33885841 aaatggggacgtgtatttacagaggaaac---aatgtaacctcctttc 33885885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 33958411 - 33958367
Alignment:
Q  478 aaatggggacgtgtatttacagagaaaacaataatgtaacctcctttc 525  Q
    |||||||||||||||||||||||| ||||   ||||||||||||||||    
T  33958411 aaatggggacgtgtatttacagaggaaac---aatgtaacctcctttc 33958367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 311 - 484
Target Start/End: Complemental strand, 37627992 - 37627819
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37627992 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattc 37627893  T
Q  411 ctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 484  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37627892 ctcatctttatctcatgttagtatcaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 37627819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 311 - 484
Target Start/End: Complemental strand, 37807121 - 37806942
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttat------gtgtgcacgtgta 404  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||      |||||||||||||    
T  37807121 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtaacctataactatttattcctactatttttatttttatgtgtgcacgtgta 37807022  T
Q  405 gaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 484  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37807021 gaattcctcatctttatctcatgttagtatcaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 37806942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 37807272 - 37807222
Alignment:
Q  163 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccgg 213  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37807272 gtcagttttgaggacgaaactattttaggtgggtagaatgtaagatcccgg 37807222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 37628142 - 37628097
Alignment:
Q  163 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagat 208  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  37628142 gtcagttttgaggacgaaactattttaggtgggtagaatgtaagat 37628097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 320 - 484
Target Start/End: Complemental strand, 19633509 - 19633345
Alignment:
Q  320 tatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaatttctcatcttt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19633509 tatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattgctcatcttt 19633410  T
Q  420 atctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19633409 atctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 19633345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 311 - 484
Target Start/End: Complemental strand, 1609431 - 1609254
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataacta----tttattcctactatttttatgtgtgcacgtgtaga 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  1609431 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactaactatttattcctactatttttatgtgtgcacgtgtaga 1609332  T
Q  407 atttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 484  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1609331 attcctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 1609254  T

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Target: chr7; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 311 - 484
Target Start/End: Original strand, 2186619 - 2186796
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataac----tatttattcctactatttttatgtgtgcacgtgtaga 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||    
T  2186619 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactaactatttattcctactatttttatgtgtgcacgtgtgga 2186718  T
Q  407 atttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 484  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2186719 attcctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaggaaatggg 2186796  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 19633671 - 19633621
Alignment:
Q  163 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccgg 213  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19633671 gtcagttttgaggacgaaactattttaggtgggtagaatgtaagatcccgg 19633621  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 28386638 - 28386680
Alignment:
Q  166 agtttcgaggacgaaactattttaggtgggtagaatgtaagat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28386638 agtttcgaggacgaaactattttaggtgggtagaatgtaagat 28386680  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 21270567 - 21270495
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatt 386  Q
    ||||||||||||||||||||||| ||||| |   ||||||||||| |||||||||||||||||||| |||| ||||    
T  21270567 ctttcaaagtatatagccaaaatccattaca---attattaaataatgtaccctataactatttatgcctattatt 21270495  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 48189436 - 48189367
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatt 386  Q
    |||||||||||||||||||||||  |||| |      ||||||||||||||||||||||||||||| |||| ||||    
T  48189436 ctttcaaagtatatagccaaaatctattaca------attaaatagtgtaccctataactatttatgcctattatt 48189367  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 15424763 - 15424814
Alignment:
Q  161 gtgtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccg 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15424763 gtgttagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccg 15424814  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 11993257 - 11993213
Alignment:
Q  478 aaatggggacgtgtatttacagagaaaacaataatgtaacctcctttc 525  Q
    |||||||||||||||||| ||||||||||   ||||||||||||||||    
T  11993257 aaatggggacgtgtatttgcagagaaaac---aatgtaacctcctttc 11993213  T

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Target: scaffold0627 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 3397 - 3342
Alignment:
Q  320 tatatagccaaaattcattatattaattattaaatagtgtaccctataactattta 375  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  3397 tatatagccaaaatccattatactaattattaaatagtgtaccttataactattta 3342  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 19214968 - 19215016
Alignment:
Q  311 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgt 359  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  19214968 ctttcaaattatatagccaaaattcattatactaattattaaatagtgt 19215016  T

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Target: scaffold0042 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 6637 - 6590
Alignment:
Q  165 cagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccg 212  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  6637 cagttttgaggacgaaaatattttaggtgggtagaatgtaagatcccg 6590  T

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Target: scaffold0042; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 14049 - 14002
Alignment:
Q  165 cagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccg 212  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  14049 cagttttgaggacgaaaatattttaggtgggtagaatgtaagatcccg 14002  T

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Target: scaffold0042; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 6481 - 6427
Alignment:
Q  320 tatatagccaaaattcattatattaattattaaatagtgtaccctataactattta 375  Q
    |||||||||||||| ||||| | |||||||| ||||||||||| ||||||||||||    
T  6481 tatatagccaaaatccattacactaattatt-aatagtgtaccttataactattta 6427  T

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Target: scaffold0042; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 6728 - 6682
Alignment:
Q  164 tcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcc 210  Q
    ||||||| |||| |||||||||||||||||| |||||||||| ||||    
T  6728 tcagttttgagggcgaaactattttaggtggatagaatgtaacatcc 6682  T

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Target: scaffold0042; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 14140 - 14094
Alignment:
Q  164 tcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcc 210  Q
    ||||||| |||| |||||||||||||||||| |||||||||| ||||    
T  14140 tcagttttgagggcgaaactattttaggtggatagaatgtaacatcc 14094  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 19990314 - 19990271
Alignment:
Q  153 tttctctagtgtcagtttcgaggacgaaactattttaggtgggt 196  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  19990314 tttctctaatgtcagtttcgaggacgaaactattttaggtgggt 19990271  T

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