View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13854_low_4 (Length: 521)
Name: NF13854_low_4
Description: NF13854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13854_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 15 - 504
Target Start/End: Original strand, 38592300 - 38592789
Alignment:
| Q |
15 |
gaaggaaaaaagcaatgatgtaacgagtaatactcataataatgaggaagatcatatgtttaaggcaaaagaagaacataatgtgggagatgaagtattt |
114 |
Q |
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| T |
38592300 |
gaaggaaaaaagcaatgatgtaacgagtaatactcataataataaggaagatcatatgtttaaggcaaaagaagaacataatgtgggagatgaagtattt |
38592399 |
T |
|
| Q |
115 |
tcaatggattacactccagctagaaggaagccaccgattcacaattgaaatattgtttgcaatttatgctacaatttattttgcgctacgaaaattttgt |
214 |
Q |
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| T |
38592400 |
tcaatggattacactccagctagaaggaagccaccgattcacaattgaaatattgtttgcaatttatgctacaatttattttgcgctacgaaaattttgt |
38592499 |
T |
|
| Q |
215 |
ttatctttaaatattgatcttgtaaagtcataaaatgttgtattttctttttcatgaatataaaacgttgtcattatacatattgatatgatacacggca |
314 |
Q |
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| T |
38592500 |
ttatctttaaatattgatcttgtaaagtcataaaatgttgtattttctttttcatgaatataaaacgttgtaattatacatattgatatgatacacggca |
38592599 |
T |
|
| Q |
315 |
ataaaatcatttttcctacatgatataaaagtatcatgctatggtttgattgatcgacatatatataaataaaataacatgaaattgagtcttgatatat |
414 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38592600 |
ataaaatcatttttcctacatgaaataaaagtatcatgctatggtttgattgatcgacatatatataaataaaatgacatgaaattgagtcttgatatat |
38592699 |
T |
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| Q |
415 |
agatttaatttgatgattcctttaataaagataacatgaaatattgtacnnnnnnngaagtatagaatacattttattttatcgtctaat |
504 |
Q |
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| T |
38592700 |
agatttaatttgatgattcctttaataaagataacatgaaatattgtacaaaaaaagaagtatagaatacattttattttatcgtctaat |
38592789 |
T |
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