View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13854_low_5 (Length: 502)
Name: NF13854_low_5
Description: NF13854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13854_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 222 - 492
Target Start/End: Complemental strand, 30362716 - 30362446
Alignment:
| Q |
222 |
tagttcacatattcatgttcattcgtagatatactttgcaatatttatcgaggattgttgtaatttaccattttcggtaacataaatcaatggattgttg |
321 |
Q |
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| T |
30362716 |
tagttcacatattcatgttcattcatagatttactttgcaatatttatcgaggattgttgtaatttaccattttcggtaacataaatcaatggattcttg |
30362617 |
T |
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| Q |
322 |
tacttttccttgatgtagaccaacagtttcttaaatccaattggataactataaaaccaatctgaagcagcctgcagatatatataatcatggaggtttt |
421 |
Q |
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| T |
30362616 |
tacttttccttgatgtagaccaacagtttcttaaatccaattggataactgtaaaaccaatctgaagcagcctgcagatatatataatcatggaggtttc |
30362517 |
T |
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| Q |
422 |
atatttttattttaccagaaagataaacttcatttgatttggtcacacttgtacgtacctgtggacctatg |
492 |
Q |
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| T |
30362516 |
atatttttattttagcagaaagataaacttcatttgatttggtcgcacttgtacgtacctgtggacctatg |
30362446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 30362985 - 30362809
Alignment:
| Q |
18 |
tattgaagcaaatagacagaatttttagatataaaaacaaccattacctaattgctgattgaagatatgagagatggccctgataataatgaattctgtc |
117 |
Q |
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| T |
30362985 |
tattgaagcaaatagacagaatttttagatataaaaacaaccattacctaattgctgattgaagatatgagagatggtcctgataataatgaattctgtc |
30362886 |
T |
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| Q |
118 |
aatgtccttaagcgcttcctccaatggcagtgttggattatttttctcatctatacctgcaaatcaagtcaagtatg |
194 |
Q |
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| T |
30362885 |
aatgtccttaagcgcttcctccaatggcagtgttggatcatttttctcatctatacctgcaaatcaagccaagtatg |
30362809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 371 - 492
Target Start/End: Original strand, 29400543 - 29400665
Alignment:
| Q |
371 |
tataaaaccaatctgaagcagcctgcagatatatataatcatggaggttttatatttttattttaccagaaagat-aaacttcatttgatttggtcacac |
469 |
Q |
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| T |
29400543 |
tataaaaccaatctgaagcagcctgcagatatatataaccatggaggtttcatatttttattttaccagaatgataaaacttcatttgatttggtcacac |
29400642 |
T |
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| Q |
470 |
ttgtacgtacctgtggacctatg |
492 |
Q |
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| T |
29400643 |
ttgtacgtacctgtggacctatg |
29400665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 29400436 - 29400535
Alignment:
| Q |
241 |
cattcgtagatatactttgcaatatttatcgaggattgttgtaatttaccattttcggtaacataaatcaatggattgttgtacttttccttgatgtaga |
340 |
Q |
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| T |
29400436 |
cattcatagatttactttgcaatatttatcgaggattgttgtaatttaccattttcggtaacataaatcaatggactgttgtacttttccttaatgtaga |
29400535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 29400187 - 29400235
Alignment:
| Q |
81 |
gatatgagagatggccctgataataatgaattctgtcaatgtccttaag |
129 |
Q |
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| T |
29400187 |
gatacgagagatggtcatgataataattaattctgtcaatgtcgttaag |
29400235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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