View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13854_low_9 (Length: 420)
Name: NF13854_low_9
Description: NF13854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13854_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 38391321 - 38391707
Alignment:
| Q |
17 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccgctaaaccagtatacaccatcatagatgatgaaaaatccattgaaa |
116 |
Q |
| |
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|||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38391321 |
caaaggacagttataaataatgctgccattttgaccaagtgagttacaaggaccgctaaaccagtatacaccatcatagatgatgaaaaatccattgaaa |
38391420 |
T |
|
| Q |
117 |
aatctgctttcaacacacaagttgttacaaagattggcaaaaagaatgttgtactaaaaaactgaagcttcttaaccaatgctgatcctaaaggaggtcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38391421 |
aatctgctttcaacacacaagttgttacaaagattggcaaaaagaatgttgtactaaaaaactgaagcttcttaaccaatgcagatcctaaaggaggtcc |
38391520 |
T |
|
| Q |
217 |
ttcaggaacagacagtcccaaaacgaaaactcccaagacaaattcttgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38391521 |
ttcaggaacagacagtcccaaaacgaaaactcccaagacaaattcttgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
38391620 |
T |
|
| Q |
317 |
taaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggtattaat |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38391621 |
taaatgtaactatccttcacaggtcttccttctggtgtatgtttgatgatccaaaacattattggtctacataccaatggtattaat |
38391707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 38382463 - 38382849
Alignment:
| Q |
17 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccgctaaaccagtatacaccatcatagatgatgaaaaatccattgaaa |
116 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| |
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| T |
38382463 |
caaagggcagttataaagcatgctgtcattttgaccaagtgagttacaaggaccgctaaaccagtatacaccataacagatgatgaaacatccattgaaa |
38382562 |
T |
|
| Q |
117 |
aatctgctttcaacacacaagttgttacaaagattggcaaaaagaatgttgtactaaaaaactgaagcttcttaaccaatgctgatcctaaaggaggtcc |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38382563 |
aatctgctttcaacacacaagtggttacaaagattggcaaaaagaatgttgtacaaaaaaactgaagcttcttaaccaatgcagatcctaaaggaggtcc |
38382662 |
T |
|
| Q |
217 |
ttcaggaacagacagtcccaaaacgaaaactcccaagacaaattcttgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
316 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
38382663 |
ttcaggaacagacagtcccaaaatgaaagctcctatggcaaattcttgattaatcttaactgacaaaatgccaaaaacaaaaaccattgaaatgataaca |
38382762 |
T |
|
| Q |
317 |
taaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggtattaat |
403 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38382763 |
taaaggtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggaattaat |
38382849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 38399910 - 38400297
Alignment:
| Q |
17 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccgctaaaccagtatacaccatcatagatgatgaaaaatccattgaaa |
116 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||||| | | ||||| | | ||||||| | ||||||||||| |
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|
| T |
38399910 |
caaagggcagttataaataatgctgccattttgaccaagtgagttgcaaggaccagtaaaccagcagataccataacatatgatgacatatccattgaaa |
38400009 |
T |
|
| Q |
117 |
aatctgctttcaacacacaagttgttacaaagattggcaaaaagaatgttgtactaaaaaactgaagcttcttaaccaatgctgatcctaaaggaggtcc |
216 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||| |
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|
| T |
38400010 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctagaggaggtcc |
38400109 |
T |
|
| Q |
217 |
ttcaggaacagacagtcccaaaacgaaaactcccaagacaaattcttgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
316 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38400110 |
ttcaggaacagacagtcccaaaatgaaagctcctaagccaaataattgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
38400209 |
T |
|
| Q |
317 |
taaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggtattaatg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38400210 |
taaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggaattaatg |
38400297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 37840171 - 37839785
Alignment:
| Q |
17 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccgctaaaccagtatacaccatcatagatgatgaaaaatccattgaaa |
116 |
Q |
| |
|
||||| || |||||||| |||||| ||||||||||| |||| || | |||||| |||||||| || ||||||| ||| |||||| ||||||||||||| |
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|
| T |
37840171 |
caaagagcagttataaaacatgctgtcattttgaccatgtgaattgctaggaccactaaaccattagacaccataatatatgatgtcaaatccattgaaa |
37840072 |
T |
|
| Q |
117 |
aatctgctttcaacacacaagttgttacaaagattggcaaaaagaatgttgtactaaaaaactgaagcttcttaaccaatgctgatcctaaaggaggtcc |
216 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||| |
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|
| T |
37840071 |
aatcagctttcaacacacaagtagttacaaagataggcaaaaagaatgttgtaccaaagaactgaagcttcttaaccaatgtagatcctaaaggagctcc |
37839972 |
T |
|
| Q |
217 |
ttcaggaacagacagtcccaaaacgaaaactcccaagacaaattcttgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
316 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |
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|
| T |
37839971 |
ttcaggaacagacagtcccaaaatgaaggctcctaagacaaattcttgattaatcttaactgaaaaaataccaagaagaaaaaccgttgaaatgataaca |
37839872 |
T |
|
| Q |
317 |
taaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggtattaat |
403 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37839871 |
taaatgtaactatctttcacaggtcttccttctggtgtatgtttgatgatccaaaacattattggtctacataccaatggaattaat |
37839785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 301
Target Start/End: Complemental strand, 37831909 - 37831745
Alignment:
| Q |
142 |
tacaaagattggcaaaaagaatgttgtactaaaaaactgaagcttcttaaccaatgctgatcctaaaggaggtccttcaggaacagac----agtcccaa |
237 |
Q |
| |
|
||||||||| | ||||| ||||||| || ||| |||||||||||||||||||| | ||| |||||||||||||||| ||||| || |||||||| |
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|
| T |
37831909 |
tacaaagatagaaaaaaataatgttggaccaaagaactgaagcttcttaaccaacacagatgttaaaggaggtccttcacgaacaaacaaatagtcccaa |
37831810 |
T |
|
| Q |
238 |
aacgaaaactcccaagacaaattcttgattaatcttaactg-acaaaataccaagaacaaaaacc |
301 |
Q |
| |
|
||||||| |||| |||| ||||||||||| |||||||| | | ||||||||||||||||||||| |
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|
| T |
37831809 |
aacgaaagctcctaagataaattcttgatctatcttaaccgaaaaaaataccaagaacaaaaacc |
37831745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 5622628 - 5622550
Alignment:
| Q |
299 |
accattgaaatgataacataaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacatta |
377 |
Q |
| |
|
|||||| |||||||| |||| ||||||| ||| | |||||||||||||||| ||| || |||||||||||||||||| |
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|
| T |
5622628 |
accattaaaatgataccatagatgtaaccatcatccacaggtcttccttctttagtatgtctgatgatccaaaacatta |
5622550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 35299099 - 35299169
Alignment:
| Q |
307 |
aatgataacataaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacatta |
377 |
Q |
| |
|
||||||| |||| ||||||| ||| | |||||||||||||||| ||| || |||||||||||||||||| |
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|
| T |
35299099 |
aatgataccatagatgtaaccatcatccacaggtcttccttctttagtatgtctgatgatccaaaacatta |
35299169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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