View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13855_low_2 (Length: 375)
Name: NF13855_low_2
Description: NF13855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13855_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 31639978 - 31639636
Alignment:
| Q |
16 |
atccaatgatcccacaagcaagtttgaggttgcatcagtgatctctggcaatctttcagatacaagtttttgcattgagaaaggatattttccaaagata |
115 |
Q |
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| T |
31639978 |
atccaatgatcccacaagcaagtttgaggttgcatcagtgatctctggcaatctttcagatacaagtttttgcattgagaaaggatattttccaaagata |
31639879 |
T |
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| Q |
116 |
agaggatcaaggaacctgattcacattagtgttatgttacacatcttttatgtggaagatgagttcttactttcttagttgttacaaattaagctatcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31639878 |
agaggatcaaggaacctgattcacattagtgttatgttacacatcttttatgtggaagatgagttcttactttcttagttgttacaaattaagctatcaa |
31639779 |
T |
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| Q |
216 |
actttgtgataattataattatgttagtatgagtaaggttaccatccaagggaaaagtccatagctctagctgctgcttctttgtcttcatcaagttcag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31639778 |
actttgtgataattataattatgttagtatgagtaaggttaccatccaagggaaaagtccatagctctagctgctgcttctttgtcttcatcaagttcag |
31639679 |
T |
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| Q |
316 |
ttataggttcataccaaacagcatctagtgctatccctatttt |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31639678 |
ttataggttcataccaaacagcatctagtgctatccctatttt |
31639636 |
T |
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