View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13855_low_3 (Length: 321)

Name: NF13855_low_3
Description: NF13855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13855_low_3
NF13855_low_3
[»] chr8 (1 HSPs)
chr8 (24-319)||(28140118-28140408)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 24 - 319
Target Start/End: Original strand, 28140118 - 28140408
Alignment:
Q  24 ttcattattatttgcttaaaatgtagggagacaatatttttcttataatacatgttgatatgataataacttatatgtttgaatttcaatttattattaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |     |||||||||||||||||||| ||||||| |||||||||||    
T  28140118 ttcattattatttgcttaaaatgtagggagacaatatttttcttataatacatct-----tgataataacttatatgttttaatttcagtttattattaa 28140212  T
Q  124 ctannnnnnncattaaacactatccaagatatccgcaaggacagagaagaaaaactccctagggtggagagcgaggaggtgaataaaacgggggatggga 223  Q
    |||       ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  28140213 ctatttttttcattaaacactatccaagatatccgcaaggaaagagaagaaaaacttcctagggtggagagcgaggaggtaaataatacgggggatggga 28140312  T
Q  224 gcgagaaagtgctcccacctttcgtttagttgtcctccatttctttgtttcattatgttggcaaccgttttttcctgccccgattagacatgtcat 319  Q
    |||||||||| |||||| || |||   ||||| | ||||| ||||||||||||||||||| || || ||||||||| |||| |||  |||||||||    
T  28140313 gcgagaaagtactcccaactctcgcccagttgacatccatatctttgtttcattatgttgacaccctttttttcctacccctattgtacatgtcat 28140408  T

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